Gene detail

Detailed information of ENSKKQP00000018312.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: CAH3157334.1, unnamed protein product [Porites lobata]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000021053

ATGGAAGGATCTATTGGAGCTCCTCAGAGTAAAGAAGCAGAAAATGTAGATGATGATGATAAGAAATCTActggaacaaaaacaaaaagttttggTATCTCAATTGACTCTGGTTTGATACCCTCCGTACCTGTTGAAAAACAAGTGTCGGTGTTAAGGAACTTAGGTGTGAATGCATTCAACCAGGATGAATTCGAAGAAGGTgttttgaaacaagttgatcaagCCATCGCGGTAAAGGAAACAGAAGAGATAGTCAAAGGATGGGAAAAGAATCTTAAAGCAGTTGATGACGATATCAAGGCAGTGGAAAATGAACTAGCAGAGATTGACAATGTACTAAGTGTCCTTGAGGAAAAGACTAGGACAGGATATGAGCCATGTCACAGAATCTTGCCAGCACAGAAACAGAAAGATCTCAAGCTGCGACAGTTAAAGAAACTCCAAGCAACTCAAAGATCATTGCATCACAAATTGGGAATAGGAGAGGGCAATTCACAAGGAGAATGGGATTTACAAGTTCCAGGTAAATGTTTGGTTGGCGTTAAATTGAATGGACTACCTTTGGAAGATGAGCTTATCAAATCAGGAGAGATGACACCCTTTGGTGGAACTTTGGGAACTGTCCAAGGGGCAACTGATTCTGAAGCTGCAAAGAATGAATTAGCCATGAATGATTTAGGAACAGAAAAACCCTGCAAAGAATCTCATGGATTTAAGAATAAAAGAACAGAGAGTGATGAAAAGCAGAAATATCTCATTCGATCATTTGCAGATGGGGTAAAAACTGACAGCAGTGATGATAATGATCATGAATACGTCCCTGACGAGAGTGAATTGAAGTACAGCTGGTATGAAGATGATCCTGATGAAAGGGAAGGCAAAATGCTACAAAGAGGGAAGAAGTCAGCTGCAATGTGGAAAAAATCTCTCAATGTAACCTACAGAGAAGACGATGCAGTCACaccaaagaagaagaagaagaaaaggaagacaGCAAGGAAAATGGGTGATACTAAGCCCCTAGACGATGGAAGTGAGAAAGTGTATCGTCAAAGAATCAGGGAATTAAGAATAAAAGAACTtctaaaaaagagaaagaactcTCTATCTGCTGCTGccgctgatgatgatgatgatgatgatcttcCCGATATGGATTTTGACAAAGGACTTAAAATTCCTGGCAAAATTTGGCACAAGTTGTACAAGTACCAGCAGACTGGTGTTCACTGGTTGTGGGAGCTTCATTGTCAACAGGCTGGGGGCATCGTTGGGGATGAGATGGGTCTAGGAAAAACAATACAGATGATTGCCTTTCTGGCAGGACTCAAGTACAGTAAAATATCAGCCAAAAAATCAAAACGTGGTAATCTTGGCCCAGTGTTGATAGTTTGTCCTGTGACTGTACTTCATCAATGGGTGCAAGAGTTTCACAGATGGTGGCCAGACTTTAGAGTGGCTGTGCTGCATGATACAGGAACATATCAAGGCTTTAAGCAAGAATTAATCAAGAAAATTTGTGATGAGAATGGTGTGTTGGTGACGTCATTTTCTGGTATGCGTCAACACCAGGATCATCTGCTAGCTCAGAGGTTTGACTATGTGATTTTGGATGAAGGGCACAAAATAAGAAACCCAGATGCAGAGATAACATTGGCATGTAAACAGTTTAGAACTCCTCACCGCATCATTCTCTCTGGATCCCCCATGCAGAATAACCTGCGAGAACTTTGGTCGTTGTTTGACTTTGTATTTCCTGGCAAACTTGGCACTCTGCCAGTCTTCATGACTGAATTCTCTGTTCCAATCACCATGGGAGGATATTCTAATGCTACAAAAGTGCAGGTATTTTTTAAAGATGAAGTATATGTACATATGTTTGTTGTTGAAGCACACTTACTAGACTTACATGTAGCTATCAAGCCAGTTCACAATTCATTGGCATCTCCCTGCTTATTACACATGGTGTGCTGCTGCGTTCTAAGATCATATAAGCATTATATAATGACAAAAAGACTTATCAGTACCTGGAATGTTTTTCCAGGTCTTATTATGTTGCGTAAGATTTGCAATCACCCGGATCTAACCTCTGAAGCTGGGTCCCTGTGGAAGGCCAAACAAGATGAACTGAAAAGTGAATTAGAGGAGGTCAGAGGGGCACAGGAACCTGACCCTGAAGAGGGATATGGAGACTGGAGAAGGTCTGGCAAGATGATTGTTGTTGATGCCTTGTTGAGCATGTGGCAAGACCAAGGACATAGAGTACTTGTTTTTTCACAAACACAACAGATGTTAAATATCCTGGAACAGTTTGTCGCATTGAAAGGCTACTCATACTTCCGAATGGATGGCTCCACCTCAGTTGCTTCCAGGCAACCTTTGATAAAAACCTTTAATGAGgACGACTCCATCTTTATTTTTCTCCTTACCACTCGGGTTGGAGGTCTGGGTGTGAATTTAGTGGGCGCAGACCGGATTGTCATTTATGACCCTGACTGGAACCCAAGCACTGACTCGCAAGCACGAGAACGGGCCTGGAGAATCGGCCAGACAAAACCAGTTACAATTTACCGCCTGATAACAACAGGGACGATAGAGGAGAAGATATACCATCGacaaaTTTTCAAACAGTTCCTTACCAATCGAGTACTTAAAGACCCCAAACAACGGAGATTCTTTAAATCCAATGATCTATATGAGCTCTTTACTTTGGACAATTGTGGTAAGAAGTGCGGAACAGAGACAAGTGCAATATTCGCTGGGTCAAATTGTGAAGTCAAGGTTCCTGGAtcacacaaaaagaaaaaacaatcaaaaagaGTTGAAAAGGGGAACCCAGACGCTAGCAAAAAATCAAcgaatttgaaagcaaacgaagCGACCAAGACTATGCGCGATAAAGGGGCATTTTGTATTGATTGGAGAGACATCGAAGAGGCGGAAGATTTCCAGAGAGATAAGAAGAAAAGTCCAATTTCAAATGTATGCGAAGAGAGGCAAGGTGAAACTTCACCTCGAACTGTCCttaatgaagaaaaaattaGTGAAGAAAAAATTGAGGAAAGCTCGTCATTGGGTAAACTTCATCCTGAAGGACAGAAATCGTCTGTCTCGCCACACAAAGTGGATGAAGAGAAACAGACTGACGATAGAAAAGCTGTGACGTTTTCACCAGGTGAAAAAACAGATGTTTTTGATAAAGTGGTTGAAGGGACCAGTGCAGAACCAAGTATTAAGGGCAAAAGAAAGATTTCTTCTTTGAGCGACGAAGAGCTGAAGAAAAGAATCAGACtcaaacagaaaaggaagaagaagaagcgtCGGAAAACAAAGATTGACGGCCGTGAGATCGAGCATCTGGTTTATCAGGAAATTTACAACCCAGCGAATACCAGCCAGTCAAGTGCTTCTGAGGAGATGGAAGAACAAAAGCAACACAACGCTCGTCAAGATGAGTTTATTCTCAAAAACCTCTTTCAGAAAACAGGTGTGCACAGCGCTCTAAAACATGATGCCATAGTAGAGTGCAGTAACCCGGATTTAGCTTTGATTGAGTGTGAGGCAAATCGTGTGGCTCAAAGCGCAGTCAAAGCTCTTAAAAGATCACGCCAGCGATGCCTCGGTGCGACAAGCGGTGTACCCACGTGGACAGGCGTTTCTGGATCATCTGGTTTATCGGAGCGGGTTGCCAAGAGTGCACCTGCTTTCTTACAGATCTCTTCAATCGCCGATAGCCAGCCTCACTTCAGCGGCGACCTAATGGGCATGAGCAGTGCAGCTGCAGGAGATTCAGAACCAGTCCACTCCAGTCAATTGCTCGCTAAAATGAGGGCGCGAAACAATCTGGTTCCCAGTAGTGATGCCAGCGCTGATTGTCTTGGAAACGAAAGTGATAATTTACTGGTTGAGATCAGGAATTTCATTGCGTTACAGTGTTCAGTGACTGGTCAAGCAACCACACATGAAATTTTAGACGAATTTGGCTCCAAACTTCCTCAGAGCGACTCGGTTGTGTTTCGCTCGATGCTGCGGCAAATTTGCACTTTCACGAGAGATTCACTGAGTGGTAAAGGCATTTGGGTGTTAAAGGAGGAATTTAGATGA

Transcript

ENSKKQT00000021053

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03468	DNA excision repair protein ERCC-6 OS=Homo sapiens OX=9606 GN=ERCC6 PE=1 SV=1
F8VPZ5	DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1
Q9UR24	DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp26 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR050496 all species →	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629 all species →	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006283 all species →	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10841	ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.