Gene detail

Detailed information of ENSKKQP00000019655.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029195199.1, neuroepithelial cell-transforming gene 1 protein-like isoform X2 [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000022566

TAAATTCTTGTGATCATGTTACAGTCCTAAATGAGATCAACATCATGAAAGGGACCTTCCATCTGGATTTAATCCAAAAAGATTTGTATTACGGGAAAGACAGAGTAAGCTTGCCTTCAAGGAAACCTCAGCTCTCCTCATTTAGAATCTTGAAGTCTACACCACCGTGTCAGAGAGTTGTGTGGCTCTTATGTGAAAGGCTTTCTGTTCAATTTTAATCTTGGACATTTTTGTCTGCCAAACAATTTCTCAACTCTTGCTTTCCCAAAGAGGTCTTAGGATTGTCTCAGCACAAAACAATGATTAAGCCTCTTCTTCGCCGGCACAGCATCTCAACTGCCGCACAGTTTTTTGAGCCAGCTCCTTCGCCAACTAGGGCTGTTCTTCACCAGGAGCCTTCTACAAAGAAGATTTGTGCTGTATCAAACATGACGGCTTTGGTGAATGGCTCTCCAGGTCCAACTAAGAAAGGAATTTTAGTACAGCGATCTGTCAGCTTAAGGTCCAGTCTCACAGTTAAAGACAGCGAATATGCAAAGCGTTATAGGTTGCCCCAGACCCCAACAAAACATAGACCAAGCAAGTCATGGAGTGACACTCTATCAAACGATGAGGTTAGCAAGACACTTTCACAGACTGAAATCAAAAGACAGGAGGCTATTTATGAAATCTGCTCTggtgaagaaaatgttgtttCCGATCTTAAGCTGATTAAAGAGGTATATTATGCCCCAATGTACAAACTGAAGCTAATGAATGAGTATGAATTCTCAAAAATTTTTGGATGCTTGGAAGTTTTACTGGCTCTTCACCAAGATCTCCACACAAGACTTAAAAACGCTCGCTCAAGTGATGGTACCACAGACAGTATAGGAGACATCATGTTAAACTGGTTTCCAGGTCTGCGGTGTTACGCCAGGTATTGCGCGAGCCAGTTTGAAGCGAAAACCATTCTAGATGAAAAACTTTTACAAGGGGGAAGTGTTGCGGACTTTTTACAGAGATGCCGTGATTCACCTTTCAGCCGGAAGTTAGATCTCTGGAGTTTTCTAGattcTCCTAGAAGTCGCCTTGTGAAATACCCCTTAATGCTCCGGAGCATCCAGAAATACACGCCGAAGGATCATTCCGACTGGCATAAACTGGAACAAGCGATAAGTCGTTTACAAGATATTATTGAAGAGGTGGATCGAAAAACAGGCGAAGCCAAGTGTCAAGACGTGCTCAGTAGAATAGTTTTCCTGGACGATAGACAgATGTGTCCAGAGGTTTTCAAGTCTAGGAAGCTTATATGTAATGGAGTGCTAAGAAACAAGCATGGGACGAAACTTCAAGTTTTTCTGTCAGAAGCGGTGTTTCTTCTTACTCGCCCGGCCACAAGGCAGAGTAGAGCAAGCTATCAAGTGTTTACTCAACCAATCCCAGTTGAAAGTCTGTTAGTGGAAGATCTCCCAGATGGTGACGTCAGAGTGGGGGGTTCCTTCAAGAATGCTATCTCAAGGGGCACAGcaaaaaaCGTGTTTCGAGTTTCCAGTACTGACCCGGATGGAGGCCATTCACATACACTGCAAGCGCCGAGCGAAGACGAGAAAAAACAGTGGCTTAATGCCCTTCGCAGCGTCATACCTTGCACGGACAATTTTAAGGCGTACATTTGACGTCACGGGCCATTTAAGTTCGACTGGATCGCTTTTGGAGAAGCCACCGAAAGATCAGCTGTATGGCGTATCGTTCTCGCCTCTTGGTCCTGGTTTCAACTTCTCGCCCTCCAAACAATTCCTACTTCCACGGTTATTGGGAAGAGACGTTGCTTAGCGACGAAACCTCTGACGACGAGTTCCGTGGCTTATAAGTTTTGAGTGGAATGATTTTTTCCGACTTATTATTTAAATTGTTCCTCGGCAAATCATTTTTGGAAAGTAGCCCAACAAGATAACAGGTCACCCAAAGAGTTAACAGTCGTGATATTCAAGTGCATCCGTCAACTTTTACCTCTGAAACTTCATTGAAGATAATATCGAATCACATTTGAGAGAGTAAACTAAATCAAATTGGAACCGCAAGGATACAGCAATTTGTATGAAATTATATAAATTGtacattattattgtaaataacttatattattcaccataatatAAAGGTCAGATTGTTTTAGAGTACTTCGAGGTCACGGCAGCCAtacttgaaaagaaacaaacaccCGCTGAACTGTATTTTTATgcaatttctttcaccaaacCAATATGGCTTTTTGTCAcgtgacaaaataaaaagcgcgggaaaaatcacatgGCCGATCACTGGCtgtgaaaatagtttttttctttatagtTCACCGGAGCACACTATGTATTTTTGCGGGCGTATTCTTTGCGGGAATGTTCCGTTTACTAGCTTGAATAGACGAaacattacttttgtttttctccGCATTGTAGAATGCActtcaaaaacagaaaactattTTACTTGGAATTTTTGCGCCAAAATTGTCCGCAGCCGAGAAACCCCCTGTAAAGTCGTCTCCAGACTTCTGTGAACACTCCCATTTGTACCTCTTGACCGGAATTAGAATGAACAGAAAATTCCCAAAGGAATGTGCCCTCAAAGAAGGCGATAAATTATTTTATAGAGGTAGAAGAGTTATACAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z206	Neuroepithelial cell-transforming gene 1 protein OS=Mus musculus OX=10090 GN=Net1 PE=1 SV=2
Q7Z628	Neuroepithelial cell-transforming gene 1 protein OS=Homo sapiens OX=9606 GN=NET1 PE=1 SV=1
Q5ZLX4	Rho guanine nucleotide exchange factor 3 OS=Gallus gallus OX=9031 GN=Arhgef3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002714 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR051480 all species →	Family	Endocytic & GEF Adapter	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46006 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035025 all species →	Biological Process	positive regulation of Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20683	ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.