Gene detail

Detailed information of ENSKKQP00000020273.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_015766570.1, PREDICTED: chondroitin sulfate ABC exolyase-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSKKQT00000023240

CGCAGAGcacgtGACCAAGTTTTTGACTTCGAAACTTCAGCCGAAGCAAATTGCTTTCAGCTTGTTTCAGTGGCTTCTGGAACTAAAACATTGTCCTCGAGCAAGAAGACCGTCAAATTCGGGAAAAAATCCTTGAAATGGCATGCAACCTCAACTTCTCAATCGAGTCTTCAACTGGACTTTGCTACTGGCCATCATATTACGGGCAGCTGGCTTGAAAGAGGTGGTGTCAAAGTTTGGCTTTACAAGGACAGTGCCTCTCCAGGAAAACAGTTGAAAGTTGAGTTCAAAGATACCAGTGGCAACGTTTTGAGCCTTTTTAACGCTAATCTAAATTTCAAGGGTTGGAGAGGGATCTGGGTGAAGTTTTCGGAATGTAAATCATCCGGAGTTAGCGTTACCTCATCCAGTACTATCAATCGTGTCCTCTTTACCTTAACTGGCGAAGATACTATTTACATAGACATACTGGAGTTTAAGAACAGCCTCGGTAAACAGACACGCGACAAAATAGTACCACCGATTAATGGAAGAGATTTGTATGATGCCTCCAACACTTGGCAACGCTCATATCACTGGAGTCAACAACCCGCTCCTGATTTACCCCCTACAGTTGACGTAACGAAAAACCTACATTTAGATGTCATTAAGAGCCGAATGATGAACTGGTATCTCGATGAGACAAAAACAACCACCAATTTTCCTGCCGGAAGTTTTCTTGAACACCGATGGAATTCGCTACTCGGAAGTATACAAAGAGCACACAAGTCATATGATGACGATTTAGTGATCGAAAATGATGAAATTGTAGGACCTCCATTGTTTTGCCGCGATtgcagaaacaagaaaaaatttggGGATGTAATTACCAAAATTCTTTTTCCCCTGGCACTGGAATACCATCTTAGATCTCGCGCTGACGAAATTGACAGCACTGCCGCGGCCGAACTTGCTAACCTCAACTCTGCTGTTGCGGCTAAGAAAAAAACTGCGTACCAAGCCATTGCAGGTCGACATCAGGCCATGCAAGACGTCTTTAAGACCTTCCTTCCCAGTTCATCTAACCCGCTTACTATTGATCAAGTGAAAGATGCAATCAAGGCCTTGAATTGTAATCGGATGAGCAAAATCAAACATCTTCTCGATTATGTCAAAGATCAAGGACTCGCTGACGGAAGTGGCCTGGGATCATTGGACCACGAAATGAACAGGCTAGGTTCTGGCTTCTCTCACTCCCTTTTGCTCATCAGTGATTCATTGAACGAAGCTTCGAATAAGAGCAGACTACTGGATCTTATCGAGACGGCCAAATGGTACAACGATTTTGGAGAGGTTTACCAATTGCCAGCATTTGAATATAAAGGCACAACTGCTGATCGCATGATAACAATACTTCTCTTCCGAGTCATGATTGTGCTTGTGATGCCAAAGAGCACAAATGAAGAAAAGAGAGCAAGGATAAGAGACATGGACGCTATAGTTCGATGGATGAATAACGCATTTGCTGTAAACGATGCTTTCGGAGGAGTCATAAAACCTGATTACACCGGATTTCACCACAAAGCCATTTACGGATCTGCGTACGTGCCACAAGCCCTTCAGGTAGCAGGGCTTGTCAAATACTTTCTTCACGGAACGAAGTTTTCGCTGTCAGGAACATCAGTCAACAACATCAGACGAGGACTTGAAGTTATACGTTTAATGGCCGCCAAGTATTCCTCTCCAAACAGTATCAACGGACGCTTTCCTAACTACTCAAACAAAGTGCTCATCAAGGCTGCATTGGGAGGCTATGCCTACTTTAGCGTTGCTAATCCTCCCGCTACAACAGAGTGCACAGTGCAACAGTGCAGTGGAATAACTGTGACCGACGTCGAAAACCCAGAGATGTTTCTGCGGTTATATGATGAAAATGACGCTTACACGATCACGATTTTGAGAGACGGGAGGATAAGAAAAAGCAAGTACTACTTAAACAGTTTGGGAGCATTGGATTTGATGAAGAAGGTGCAAACCACCTCCATTTCAAAGGGCTATTCTGCTGAGCCCTCACCAGAAGGTCACTGGTCTAAGAATTTCGCCGCCCTTTCGGTACATCGCCGTAAGGACTGGGTTGCAACGGCCAAGGGCTTCAACAAATACGTCTGGGACTTTGAAAATAAACCAAACAGCGAAAATGTTTATGGATTGTACGCCAGTCACGGAGCACTCCTGATTGCTAATAGTGAGGCGCTCCTCAGCGTCCATGATGTCGACAACGGGTGGGACTGGACCAAAGTTCCTGGAACCACAAGTATCGCACTTGATCTTGCTGACATGAACATGGGAGAAGCAAGATTTTTCGGTAAAAAAGATTTGGCTGGGGGCCTCACGTTTAAAGGAACATATCCCTTAGGAAACGGTGTTTTTGGCATGGACTTTGAACAACCATCCTATGGCCTTGCCACAACAGATCCGCGTCATAACATTAAGTTTAAGTTCAGGAagtcgtttttctttttccaaaactTGATCGTTGGTTTAGGAAGTCGTATTTCCGCACAAAACACCAATAACAAAATCGTTCAAACAACTCTTTTTCAAGACAAGCTGTTCGACGGAGTCAGTTCATCTAAAATCAAGGTAAACGGAGTAGACAAAACCTACTCGGACACGGCCAACGCTTACACTcccaacaaacaaaatgttgcctACACCACTCTTACTGATGCAAAAGGAAACTTTTACTATATTCCAAGCAATAGCAAAACGAGCTTAAAGGTCCATCTGACAGATCAGAACTCCAAAACCCAAGATGGGAAGACTACCACAAAGGGCCGCTATGCCACGGCGTGGTTTGATCATTCCAGTTCACCAAACAACGTTGAATATGAATACGCTGTATTGATACCGACGGCTACTTACCATACGACGCTAACCGACCTAGCCACAGCCCAAGAAAGTGCTAACGACAAAGTTTACAAGGTCTTGAAACAGGATCACCAAGCCCATGTTATCCAGTTTTTCAAGTCGCCGAAAACATGGACTCCTCTCGGTAATGACCATGTAGTCACGGGTTATGTCCTTTTTAGAGAAAACTTGAATCTTCCACGCGGCGGGGAAATTAAGCACGTTACCGCTAAAGATGTGCTACTGATGGTGGAAAAGTCCGATGACTTTATTTTCCTGAGTGTGAGCGTTCCCAGTCTGGATCTCCATACCAAGGGTAATTTGAAAGTCAACAACGATGTGCAACAAGAGGAAAGGTATCATTCATCAAGTCAAGAGAAGGAAGTAGAAGTCACACTGAGAACAAAGGTGGAAAGTAGCGTGGTTTACGCCCAAGCCCATGGAAATCCGGATTGCTACAAACCCAACGTGTGGGTTTTCGGTAATAACTTGAAAGTGAAATTCTTAAATCTAAAGAATGGATTCAGCGTTGAAGTGAAATTGAAAAAGATGACGGTTTGA

Transcript

ENSKKQT00000023240

Protein

Uniprot

Uniprot term	Description
C5G6D7	Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron OX=818 GN=chonabc PE=1 SV=2
Q8A2I1	Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=chonabc PE=1 SV=1
P59807	Chondroitin sulfate ABC endolyase OS=Proteus vulgaris OX=585 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02278	Lyase_8	Polysaccharide lyase family 8, super-sandwich domain	Family	Interproscan
PF09093	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan
PF09092	Lyase_N	Lyase, N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014718	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR003159	Domain	Polysaccharide lyase family 8, central domain	Interproscan
IPR008929	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR011071	Homologous_superfamily	Polysaccharide lyase family 8-like, C-terminal	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR039174	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR015177	Domain	Lyase, catalytic	Interproscan
IPR015176	Domain	Lyase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0016829	Molecular Function	lyase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006027	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08961	K08961; chondroitin-sulfate-ABC endolyase/exolyase	EC:4.2.2.20 EC:4.2.2.21	Enzymes with EC numbers	-	deepkoala