Gene detail

Detailed information of ENSKKQP00000020443.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029182881.2, gem-associated protein 5-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000023419

ATGGCGGCAGATGCGTCGAGGTTCGTTCTTCCGGCTTCTCCGAACTGGTACTGTAGCAATATAGCTGACTGCAGTCTCAACAAAGTATATGTGTTTGGAGCCCGAAACTGCCTTTATTTGTTGAACGTGGGTTCGCAGACACCTTCTTTTGAGGGTCAATTAACTGGCCATGCCGAGCGTGTAACAAGCGTGTGCTTTTCCAAACACAAGGTGCAGGCGAATTTTGTCGCAAGTGGGTCAGACGACAAGACAGTCAAGATATGGGATACCGAGACAAAGCTCATGTTGCTTGAACATAAGGCGCATAGTGGAAAGGTTACATGTCTCTCCTGGTCTCCTTTGTTGAGAGATTTGGTTGTCTCTGGTGATGAAAAAGGACAAGTTATTGTATGGAGATATGAGAAAGGATATGTTTATGGTGGTTGCCCTGTGCAAGATTACATTTTTTCTATGGCTCTTTCGTATCTTACAGAAGGTGAACTTGCTGTTGGGTACAAGAGTGGCCTGATTGTTGTGCTGAACATTTCTAGTGATGGCGCTTTGTCAGTTGTAAACAAGCTGCAAGGACATTCTAGTGAAATCCACTGTTTGGCTTGGTGTCCCACACCAAAACAACACATTGATTTTGGCCCACTACAAGACAAGGCAACAGCTGCTAATGGACACTTGGTTGTGTCTGGGAGTAGAGATCAGACAATAAGGTTATGGGACACTTCTCAAGGTAGGGTATTGTCAATCAAACATTTGCCAAAGAGATCAACGCAGAAATGGAAAGACAAGTATGATCCTCACTGGACCAAGGACAGACTGTGGCTTAGCTTGTGTTGGCCAATGGCATCAGCAGGGCATCTCATCACGAGTAGTCAAGGAGGAGAGCTGTTACTGTGGGATTTGAGCAAGGAAGGCAAAGAGCAGCATCAGACATTTGGTGTAGGCCACTCCAGAATTGTGTTTAACATTAGCTGTGATGATGCTGGGACAAGGTTAATGACTGTGTCCATGGACAGACAGATTGTCATTTGGGATCCAGCAAATTTGCAAAGCCTGCACACTCTCTCCACCCTGGGAGGATTTGCCTACTCACTGTCTATCTCCACCTTGGATCCTGGCACTCTGGGGATAGGAGTTGGGGATAACATGCTGCGTGTGTGGCAAACAGCTTCCTCTCAAAATCCTTACGAAACTTTGACTCTTTGGCAAGGAATCAATTCCAAAGTAATGGTGGTCAAATGGCATCCCAGTAAAGAGGGCCTCCTTGCTTTTGGGGCAGATGATGGACAAGTTGGAGTGTACAATACCATCTCTAAGAGGGCAGACATTTCTGCAACATATCACAAGAAAACAGTTTATTCTTTATCTTGGGGTCCTCCATGCCCTCAAACAGATTCCATGATCTCACACAATCTTTACAGCTGTGCTGGTGATGGGCATGTCTATCAACACAGGACTGGGCATTTCATGGACGATCCAATCGATGTGGATGCTTTGATTCTCAAGTCTAATGACATCAAGCACAAGCCATATGGCCGAACAGATGTGTCTTGGAATTTGGATGGTACTCTCATGGCATTGGGTAACGAAGATGGGTCCATTGAGGTGTTTGTTCCGCCAGACTTGAAGCAGATTGGACTACTAAtgacacacaaaaaaagcatCACCACATTGGTGTGGCATCATGGCTTCAGTGACATCACTACTGCAGACGTTGTTAGCTGTAAGCACTGGCTGGCTTCAGGATCCAATGAATCCGTTATTCATGTCCATGACCTCAACAGTATGTTAGGTGACTTCTGGAATCCCAGACCACGCGCAGCCCCTATCACCGAGTGTTTCCGTCAGTTGTCGGGGCATTCGGGTCGAGTTACTGGCCTGAGCTGGAGTCCTCATCAATCTGAGCTGTTGCTTTCATCATCTTACGATGGAACTGCACAGGTGTGGGATGTTCCCAAAGGAGAGCCGCTGTACAATTTTCGCGGGCACAGCAGCCGTGTTATGTGTGTAGTGTGGAGTTATCTTGATCCTGACTTGGTTTACAGTGGCGGTGAGGATGGAACGGTGCGTCCATGGAGACCATCTATGCAAGAGCATTCACAGCCACCGGTTCAAGaaaagaaaacggcacaCTCCACAAGTAAGTCATCCAAGAATAAAAAGGCGAAGCAGAAAGCCAAACAAAGGACACAGGCCATTGACAAGGAGTCATGGCGACAGGAAAAAGAACCCAAACCAGACAACGGTCTACTTGATAATACACAGACAACGAAGATGACAAATGAAAAACCAATGGTAAAAGCGACAACTACGCCTCACGAAAATACGGTCCATGCAACAGCAACAGTAGAGAATGAAGTTATCGAAGCTGAATGTGCGCAGCCGGGCGTTGGAGCGTCAACAGAAACCTTACAGGATGATATAAAGCCTAGCAGCGCTGATACAAGAAGTAAACAAGAAGTTGGAGAAGTGGAGATGCCAACGAGAACTGCTGACGGTGGTGATTCAGTGAAGAATGAAGGGGCGAGCGTTGACAAGGAGAAAAGGGTTGTTGAATCAGTTATTCCACTGCGTTCCAGAGTGTCGCTGGAGCCATCTTCTTCTgtcaaaaagaagaagaaagtgaaGTCCATGTTTCCAGTTTCTGCGGTTGCTGATAACAAATCCAAAGCCGCCTCTCAAGATGAATGCTTGCTTCTAGCAAAGATTCTTTACGACCAGACGGACAGCAATAGTTCCCTAACTGCCCCTTTGCATACAGAGGCAGGTTCAGACGGACTAACCAACCTTGGCTTGTTCGCTGATAGGCGCTCAGCTTACCGGATGATAGCTACGGAAGGTCAGCACCATGAAGAGATTGGTAACCTTGACTACCGACTTCAATTAGAAATCTGGAAAGGAAACTTAACGGGTGCTCTGGAAATGGCGACCGCCAGCAAACAATTGACTGACTGGCTTGTGGCTCTCAGTCCACTTGCTGGGCGTAACGTTTGGATGGCTACCACGCGAGCATTTGCTAACCAGTTAGAATTGCAAGGTGCTTGTCAGCGTGCTGTCTTGTATTACCTGGCTTGTCACGACACTTACAAAGCTATTGAAGTATTTAAGAAGCAGGCGATGTACAGAGAGGCAATTTCACTAGCCAAAGTTCGACTCTCGCCGCTCGACCCACTCCTCTTCGAACTTTACAGTGCATGGGCAAGGAAACTGGAGACGGAAAATTCTTTTGAGCAAGCAGCAAAGTGTTACTTGGCAGTGAAGTCGTCAACTGAAGCAGTGCTGGTCTTGTGTCGCCGCGGGGATCAATCTTCGCTTAAGACAGCATTGCAGGTTGCATTAATCAGTGGTGAGACTGAACTGGCCATCTCGCTAAGCCTGCGCCTTACTCAATCTTATTTATTGACATTAAACTGGAAAGAGGCTCAAGAGGTTTTGATTGGCTGCCCTGGAGTTGAGGCTCACCTTCTGAATGTCTATGTGCATGAATTGTTGGTTGTGAAACTTGTTGAGAAAGAAATCATCGCCGACGATTTCATTCAAGATGCTGCGTTAACACTTCACTCCTCACTCCTTTCTCTGTCAGGAAAGTACATAAGTGTGGATACTCAATGCGGATCACCTTGGATAGCCAATAGCAAACTCGAGAAGTGGTTTGTCATATCCATTCTGCAAGCTTGGTATGACTGTGGTAAATTCAAACCAGAGTCCGCTCTTCCAATGTTGAAGACACTTAAGACCTATTATGAGAGTATCTCGGTTGGAACAGAGACCATCCCCGAGATCTTATCCAAGCTCTCTCTGGAAATAACTCTTGGACTTTTGTCAGCGCTTACTGGTGATCTCTACGCCGCTTGCCAGTATTGGCTGCAGGCTCTATCGAGTAGCaacaaaaattgtttgttttccttgcaACGCCAGCTTTGCTCTATGTTGCTTCCAGATGGAACAAGATCGTTAAACAATCTCCTTAGCTTAAGCCATGAGTTATGTATTGTGAGCACAACTGATGATGCAACACTGAAAGCTGAAGCTCAAGAACAAATCTTTGAGCATTTCAATGCTTATTATTCCAAAGCACTCCTTACAGAACTGTGGTATCGGTATCCAAAGGCAATGCTAGTTTTGCAATGTAGCCAAGATGAACCCTTTGAAGATAACGACGAAACTTCCGATGGCGAGAATGATACATCTTTGGATCACTGTACGTCCGTCGGAAATTCGTCGGAAATCGCTGCCTCTCACGAAGTAAAAGGCGAGGAAGGAACGGAAACCAAATGGTGTggtgaaaacaaacttgtatCGCTTAAGGAAAGTATCTGTGGCTCTAAGCAAGATCTGATGTCGACTTTGCAGACTTTTAGGAACGTTCTGCTTTCAGATCGACACGCCAAGCTTTGTAACCTTCGTGTGTTGCTCACTGAAATCAGAAAGGCCATGTTACTTAAAAGATCGCGACAGTTTGTATATGGAAAGTATTTAattcagaagaaaaagaaagataagGAGACAAAAGACCCAGTGGCTCAACCGGTTGGCTTAAGTGTGAACTACAGTGAAGATGACGCAGCaaatgagacattgagcttcaACAATGCAGTGAAAGAGAGAATGAATGGAGAGGCGGGTAACAGCGAAGGCCACATGGTCTTAAACAAACAACCAATATTACAAGAAGAAATAACGAGCACAGCTGTTGGAAAGGATACAGGCAAACAGAGCTCAAGTCCAAGTCAGGGCAGATCAAATAACAGGTCCCATGAAGGGGCCACACGCAGTGAAGTAGTCATAGTAGCTTTCCAGACAAATGGTGGACAAATCCCAATTGATATGCGGTTCAACGATAGTAATGCTCGCTTGGATGATCTGGAGGTCGAAGAACTAGCAGTTCTCAGAGAACTCGAGCAGTACGAGATGAAGGATCTCCCGTTTCCTTCACCACTGGAGTCAGCGTTGACAATGGGACATTTCTGCTCATGCACTGATGGGCTTTCTGTATCAACTGCTGACTTGCAAGAATTTGGTGAGAGCGTCGTATCGTGGGCTCAAAGTCATGCCCAGACCTCCACAGATCTGAAAGGAGTCTTGAGGCTGCAGCATCTCTACAGTAAAGATCCAATGACGATAGGAAATAGTATCGTAAATAAACGTTAA

Transcript

ENSKKQT00000023419

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEQ6	Gem-associated protein 5 OS=Homo sapiens OX=9606 GN=GEMIN5 PE=1 SV=3
Q8BX17	Gem-associated protein 5 OS=Mus musculus OX=10090 GN=Gemin5 PE=1 SV=2
Q54IY5	Component of gems protein 5 OS=Dictyostelium discoideum OX=44689 GN=gemin5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003885 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR052640 all species →	Family	WD repeat domain-containing protein Gemin-5	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46362 all species →	GEM-ASSOCIATED PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032797 all species →	Cellular Component	SMN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13133	GEMIN5; gem associated protein 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.