Gene detail

Detailed information of ENSKKQP00000020554.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029200394.2, telomeric repeat-binding factor 2-interacting protein 1-like isoform X1 [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000023537

AGGCGCGaagtcaaaaacaaatttttcaacatGGCGGAAAACGGTAAAGATGCCTTTCCAAAGTGTTCCACACTCTTTTTGCGTGAAGATGGATCACCGATGCTCTTTTACCTGACCCCTGGTAACATGAAGACAAAGCTAAAGCCACTGATACTTCACGGAGGAGGTGAATTATCCAGCAAAGTTCTCTCAAACTCCATAAAACTTGCAGATCCTACTGTTGCTGGTGGCAATTTGCCTGGTTATCTTTCTACTGAATATATATTTGATTGCATAAAGCACAATAAACTACAAGATATGGAAAACTATAGATTTGAATGCTCTTCAAGCAACAACATCAAGGGAAAAGCTCAAGCAAAACGCAGTCCATCCAAAGGAAAGTTGTCAGGTCCATCTGGAAGTGGGAGAAGTTTTTATACTGATGAGGAAGacttggccttgataaaatttgtGAAGGAGAATAAATTTTTATATTCTATCAAAGGAAACAATTTGTACAAAGAAGCAGAAAAAGCCAAGGTTACATCTCACACATGGCAGTCTATGAGAGATCATTACATAAAAGTCTTGTACAAACGCAAGGAACCTAAGAACAAGTCACAACTTTTGTTTAAAACTAAAAAGGAGAAATCAACCGATATCCTCAAAGAAAAGATGTTAAATGTGCCTGCTAGTCAGCCAAGGCAAACTAGATCACAAACAACAGTCACTCCACGGAAGCAATGTGACAAAGACAAACAGGATGCCAGAGAAGAAGCTGAATTTGCTGTTGGTCAGCCAAGGAAAGCTAAGTCACAGACATCTAGTCCTGCAAAGAATTTCAATGATGAATCCAGCAAAGTGGACGCAGTAGCAGGCCATTCAAGAAAAACGAGATCACAGACAGCAAGTCCTACAAAGAAAATCGATAATGTTCAGCCCAGAGACTTCGCTACTTCTAGTGATACTGTGACAGATTTTACAAGCGATGATAATGCAGATGATGAACGCAGCGCTGGCGAAGATACGGATTACGATAAACAATTTGATGAGGATCTTCTTAGAATAGCAGCAGCTGAGTCCAAAGTCCAAAAGGAGCGCCCGAGTTTTGAGAATGGTGTTAAAGAGGACATGCACAGACAGAAGAAGACTCACAAACAAAACATGTTGAGCGATTTTGAGGGTGAAATTGTGGCAAAAGAAGGTTTTAAAAGAGCTTCAAGCGATGACGATGAAGATGGAGATAAGAGACCCATGGCGAAAAAGAACAAGGGAAACGATTCTTTTTCATCTGACATAAAAGAATCTCAAGGGAATGAAAAGTTTGCGAGGCGTTTTCATGAACTACAGTTAAACCTTCAGAAACTGGAATCACAATGGACAGTGCCACAAGTTATTCACGCATTACTTGTCACTTCTGGCAGCTTTAATCATGCACAGTCATACCTACAAAATGGCACAGCAGGCAAAGAATACTGGGGCTACGAGGAGGACAAGATATTGCTGAGTAAAGACAAAGAGGCCATTTCAAATTTGGCAAAAACAAGAGGATTGCAGTCTGTTGTGGACAGAATGAACTTTATGGAAGGGATAAGacaATGACCATTTCACAAGCTGTTATTTTCGCTGCATTAATATTCATCCAGTTGCAAGCTGTGGATTGCAAAGCCTGTGATCAAAGTCGTTGTATGGCTAAATACGTCTCCTGCTATAATGGGTGCAGAAGTTATAGATGTGTCGGCATTTGTCAAaagcgatgcaaaacttgtttaACAATGCCTTGTGGGCAACATAAAAAAACCCTTGACGGCAAACGAGATGCTGATACCACTAAAAGACGTGGATTTCGAAGCCAACGGCGCGTATTCATTCGATGAGTAGTCTGGCCATGAGTAAAACAAGACTGTCTTCGTGCAAAAACGACACCAAGTGATCGTAGGGAAATTGTGTATATGCTTGAGCTAGTCTACTTAACTGTTTTTGACTGAGATCAATtgttaaataaacaaaacaaacccaGTTCTTAATTTAGTAAACTGTTAATTTCAAATAAGCAACATCATTTTAAGCGTTTGGGACTTCACAAGGCTTCAAGTTTTAATTGTATGATGGctaaaaataaagaacaaatcTTTGAAGAAGTCTGTGACCATAACTAGTATCGACACAATCCGTCATATTATAAGAATTGCAAACCGGAGGGTAACCGTGTTCATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAN7	Telomeric repeat-binding factor 2-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Terf2ip PE=1 SV=1
Q91VL8	Telomeric repeat-binding factor 2-interacting protein 1 OS=Mus musculus OX=10090 GN=Terf2ip PE=1 SV=1
Q0VCT3	Telomeric repeat-binding factor 2-interacting protein 1 OS=Bos taurus OX=9913 GN=TERF2IP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003311 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF08914 all species →	Myb_DNA-bind_2	Rap1 Myb domain	Domain	Interproscan
PF11626 all species →	Rap1_C	TRF2-interacting telomeric protein/Rap1 - C terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR015010 all species →	Domain	Rap1 Myb domain	Interproscan
IPR039595 all species →	Family	TE2IP/Rap1	Interproscan
IPR021661 all species →	Domain	TRF2-interacting telomeric protein/Rap1, C-terminal	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16466 all species →	TELOMERE REPEAT-BINDING FACTOR 2-INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0010833 all species →	Biological Process	telomere maintenance via telomere lengthening	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070187 all species →	Cellular Component	shelterin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11113	TERF2IP, RAP1; telomeric repeat-binding factor 2-interacting protein 1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.