Gene detail

Detailed information of ENSKKQP00000021099.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_015779682.1, PREDICTED: ran GTPase-activating protein 1-like isoform X2 [Acropora digitifera]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000024108

TTTAGCGCCCGCACACTTTCCGCACGCTCCGATAATTCCCAAAAAAGTATGCGTAATATGTTGCTGGTGTCCAGTCTCATCTCATAGACTTGTGGATTTAGTAATTCGTTGAAAGTTAGTTGCACATGGTTTACAACTTCACCAGGATCTCTCGTTCTAAGCTAACCTTGATTTAGAAAATGGCAGACACGGAAAAAGATGTTCAAGGTGTTGCAGAATTGTTGGCAAAAACGAAAGTCGACCAGGTCAACATTGTTAGTTTTAAGGGAAGAAGCTTAAAGTTGAATTCGAGCGAtgacgcTGTGGAGGTTGTCAATGTAATTAAGGCTAGCAAAGACATCCAAGCGTTGTGCTTGGAAGGTAACACAATTGGAGTGGATGCTGCCAAAGCGATTGGAGAAGCGCTGTCAACAAGGCAAGAATTTGAGaTAGCGTCATGGAGTGACATTTTTACTGGGAGGCTAAGATCAGAAATTCCTTTAGCATTGGGACATCTGAGTGATGGAATCATAGCAGCTAATGCTAAGCTGACAGAGCTGGATCTTAGTGACAATGCTTTTGGTCCTGACGGAGTTGAGGCTTGTGTAAGACTTCTCACCAGCTGTGCCTGTTACTCGTTAACAACGCTGAAGCTCAATAACAATGGACTTGGTGTTGGTGGTGGAAAGATTCTTTCAAAAGCTCTGATTGATTGTCACAAATCTAGCTCAGAGGCAGGGAGTCCTTTACAGCTTAAAGTGTTTATATCTGGAAGAAACAGACTGGAAAATCCTGGAGCCAAATCATTGGCAGAAGCATTCCAGATCATTGGTACATTAGAAGAACTCCAGATGCCACAAAATGGAATCCAGCATGAAGGAATAGCTGCACTGGCTGAGGCATTCAAGTCAAATCCTAATCTTAAGATTTTGAATTTAAACGATAACATATTTACTGCTAAAGGGGCAAAAGCAATGGCTGAGGTGTTACCGAGCTTAAAAAGCCTTAAAGTCATCAATTTTGGTGACTGTCTGGTAAAGACAGAGGGAGCGAAGGAATTGGCAAAGAGTCTACGGAGTGGGGTCAACAATTTGCAAGAACTGAACTTGTCATATGATGAGATCAACAAGGAAGGTGCTTTAGCCATTGTTGAGGCTCTGGAGAGTAAAGATTGTTTGGAGAAACTTGAATTAAATGGAAATGCTATTGGAGATGATGGAATCGCAGAAGTAAGAGGCTGGTTGGAATCAAATAGATGTCTTCATACATTGGGTTCAATGAGTGGTGACGAAGGTGAAAGTGATGAGGAGGAGAAGAATGACGAAGGAGGCGAAGAAGATGAGCTTGGTGGTGAGAACAATGAAACTGATGAAGGAGAAGATGTTGCGGAGTTAGACTTTAAAGTGACTGGTGTCGGTCTTAAGCCACAGTCGCCATTGCTAGGAACAGATGAAGAGGTGGAGAGTGAGCTAACGAAGAGACCTAACCTGCCGACTGGAGATTCCAATCGAGAAACCACGGCCTCTTGACTAAAACGACCAACGCTGATCCACAGATTTTAGACGTTTTGCTAGAACTCTACTTCAAACACGCAGaacttttatttatatttattgatCACAGTCATTTTGAGTATGTAAAATGTTGATTTGGCATCGCGTCAAGGAAGGCATTATTTTTAGAGGTAGTTTTTAAGGTGTAGTTTAGTAGTTAGAAAAATTCTTGTTTACAGTTTATTCTAAGGGTGTTGGAATCGAGTCGCCTTTGGCTATTTTAATCACGCTGGCCAATCAATCACACTCTACTGTGGAAATCAGTCGAGCCAGTCGAATTTTAAAGGACTCGACGCTGTCAAATTTACATCGAAAAACACCTTTTGAATGTGAGCGTTTAGTGTTGCGTGACGCCTCGCATTACAGCAATCATTGTGCATTTTGTCGTAATAATGGGCTTAACGGAACTCTAACGGTTCGTTTCTTGGCCACTAACAAAACGCAAACGACTGGCAAAAACAGTAATTCGCGACATGAAGCAGCTCTACATCAAATTCTGTTtcataaaatattaatttcGCGGTTCCGTGCGACGTGCGTTTAGTTATAACCTTTCCATTTAATCTCTTATTGCTTATTCGTAAACCCCTTGTTATACATTTTCGCGCGTGtattttatttgaaataatttgaattgTAAATATCTAGTAAATCAAtactgtaaatttttttttaagaactaGATTTGTTTTTCATACCAGTGTTTTGCGTGTCGTAATTTACGTTAAGTAAACTTAGCACATGTTTTGATTATAATATTCTGAGTGCTTAATCTGCCCTTGGAAGGAAACAAGCTGGAGAAGTGGGGTGGCTTCCCACCCTCCATTAAGATTGagatcattttattttacctgcCTTCATTGAGGGAAGAAAATCCTGGCGCTGAAAGAAGCTTGGAATCGAATCATGCCAGCCTCGATAGCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46060	Ran GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=RANGAP1 PE=1 SV=1
P46061	Ran GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Rangap1 PE=1 SV=2
O13066	Ran GTPase-activating protein 1 OS=Xenopus laevis OX=8355 GN=rangap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003860 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027038 all species →	Family	Ran GTPase-activating protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24113 all species →	RAN GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14319	RANGAP1; Ran GTPase-activating protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.