Gene detail

Detailed information of ENSKKQP00000022059.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029180819.2, tripartite motif-containing protein 26-like [Acropora millepora]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

ENSKKQT00000025246

ATGGCCGAGAGTAACGAAACTCGAGGGTTAAGTTGTTCCGTCTGCTATAATCATTTCAAATCAGACGAAGTTCAGTTTGTCCCTAGAAATCTCAACTGTGGCCATACGTATTGTACAGGATGTCTGAACAAGCTTGCATTTCAAGCACGCAATCCTGGCACAATATGTTGTCCAACatgcaaaacagaaacaacGTTGTTTCCAAGAACTTTTGAAAGTGTTAGGAATCTCCCCAAGAACTTTGGAGTGCTTGAAATTCTTGAGGGCAAAGAAGAAGTTCAAACAAATGGCATACagaaagagaaggaaaaaaataagtaCCTTTGCCCTGAACATGATGAAGCTCTGAAAGTTTATTGCTTCACAGATAACTGCCTCATTTGCATCTACTGTCAgGTTTATGGCAAGCATGCAGGTCatgactgcaaattggccactGATATTGTGACAACAACCCGCGAGGAACTGCGGGGCTGGTCAAAGAAGTTAGGTGACAACTATGACTTGATcaagaaatcaaggaaaagtGTTATTGACACCAAGGACTCCATTCTGAACACACAGCATTATGTGCGGAACAGAATAATGAAACATACGGGAGTCTTAAATTCATGCATGAGACGGAGAGAGGTTGTGCTCAAATGTGAAGTTGATGAAAGAACCAAAAAGAAATTGGAGCTGTTAGATGTTCAAGAAAGTGCTATGACTGACATTGTCAACAAGTGCGAAGAAGCTTACTCCTTAATACAGAAATGCCAAAACAATGACAGTGCCTTGGTTGAGgagaaaaccaaaattggtagaCTTGTTGGAGAAATTTCCACTCTGATGGAAAAATGTGAACTGGAACCAGTAGAAAAGGACAATCTTACTTACTATTTTGAATATGATATTGCCTACACCCTGGAAAATACCATTGGTGAAATTCGCCTGCTGAAACCAGGGCAAATAGAGGATCCTTTGGCAGGGCTCAACAAGCATGAACTGTTAAGAGCTTTGGTAAGGCAGGAGACAAAAGATGCAGCCACACAGACAGACGAAATCCAGGGAGGAAATGATGATCATCCATTGTTTCAGAGCTTATTACAAGGGCTGGAGGAGATTGTTCACACTGGGCTGACAACTTCATCATGGAACGACGAGATAACTGAACAGAGTACAGACAGCTCAGAAAGTGGTGTGTTAGAATCTGCTGCTGAGGAATTTGATGACCCATTGGAGTGTTCAAGTGACACAGGAAATTTTCAGTCTGAAGATGAAGATGTGAGTGTAGAACTTGAGGGAGCAGTGGGTGGGGCTGTATTGCCACCTCCTTCAAGTAGATTGGATTCACAGGAACCCCAAAGTGAAGATGACTCAAAAACAAGTTTGTTGGATGAGCTGCAGAAAGAAATAGACCGATTACGCCTTCTCAGCCCAACAGGGGATGTCATTTCATTAACTGCTGGAGAAACAGAGGGAGAAAATGATACATCTGCCAACACTGAATCAGATGATGCTATTGCTGAGGATGTCAGGTCAGCAGATGCAAGACCAAGGTTAACTTTGCTTTCATCCCCTGATCAACCGGAACATGTTATTTCAACCAGGACCAACTCACCCCCACCTGGTCAGCAAACGCTTTCCTTGTCTTCTTCCCTAACCCTCCCTGAACACATTACACTTCTGAGCAACACAGCTGGCTTCAGTCTAGACAGCAGTCGGTTGTTGGCATCAAAGGACAGGACCAAGTGCTCTGCTGCAGATTGCAAGAGCCCAGACACATTCCCTTCTCTGAAATGCCAGTACTGCCGTCGCATCTTTTGCCCATCCTGCGCACCACTGGTTTTTTCATGTCGCAAGAGTGCAGTTGGACACAGTTTTGTGTCAAATCTCAGGAACCGAGGTCCAAGAACTTCCAGGGTCAGAAGCAAGGAAAGGAAGCCCAAAAAAGATGCAGATCCACCTTGGCAGTGTGGAATATGTACCATGCTGAACGGCCCTCAGGTGCTTGTTTGCCTTGGGTGCAGTTCCCTGCGTGAATTTGAGGCACAAGAAGGTCGCAATGTGTGTCCCATGTGTACTTTGGTTAATGAGCCTGGCAAAACCAATTGCGAACTGTGTGGGACAGATCTGGTCAGCAAAGGGCAGGTTGAAGTGGTCATTGAACCTGAATGA

Transcript

ENSKKQT00000025246

TCTCATAAACTGAATTCTAGACGTCTCAACGTCCAGGAACTGTGAGTCTCTGGCGGTAAAGGTTTCACCTTGTTTGCAATGTCATGTCAGCAATATGACTGCCACAACTTGCTGTGTGTAACCAGGAGCTTTTCTGCTCTATGTAGAATCCAAACTACTGGCAACGAGTCATCATCGACTCCATGGCCGAGAGTAACGAAACTCGAGGGTTAAGTTGTTCCGTCTGCTATAATCATTTCAAATCAGACGAAGTTCAGTTTGTCCCTAGAAATCTCAACTGTGGCCATACGTATTGTACAGGATGTCTGAACAAGCTTGCATTTCAAGCACGCAATCCTGGCACAATATGTTGTCCAACatgcaaaacagaaacaacGTTGTTTCCAAGAACTTTTGAAAGTGTTAGGAATCTCCCCAAGAACTTTGGAGTGCTTGAAATTCTTGAGGGCAAAGAAGAAGTTCAAACAAATGGCATACagaaagagaaggaaaaaaataagtaCCTTTGCCCTGAACATGATGAAGCTCTGAAAGTTTATTGCTTCACAGATAACTGCCTCATTTGCATCTACTGTCAgGTTTATGGCAAGCATGCAGGTCatgactgcaaattggccactGATATTGTGACAACAACCCGCGAGGAACTGCGGGGCTGGTCAAAGAAGTTAGGTGACAACTATGACTTGATcaagaaatcaaggaaaagtGTTATTGACACCAAGGACTCCATTCTGAACACACAGCATTATGTGCGGAACAGAATAATGAAACATACGGGAGTCTTAAATTCATGCATGAGACGGAGAGAGGTTGTGCTCAAATGTGAAGTTGATGAAAGAACCAAAAAGAAATTGGAGCTGTTAGATGTTCAAGAAAGTGCTATGACTGACATTGTCAACAAGTGCGAAGAAGCTTACTCCTTAATACAGAAATGCCAAAACAATGACAGTGCCTTGGTTGAGgagaaaaccaaaattggtagaCTTGTTGGAGAAATTTCCACTCTGATGGAAAAATGTGAACTGGAACCAGTAGAAAAGGACAATCTTACTTACTATTTTGAATATGATATTGCCTACACCCTGGAAAATACCATTGGTGAAATTCGCCTGCTGAAACCAGGGCAAATAGAGGATCCTTTGGCAGGGCTCAACAAGCATGAACTGTTAAGAGCTTTGGTAAGGCAGGAGACAAAAGATGCAGCCACACAGACAGACGAAATCCAGGGAGGAAATGATGATCATCCATTGTTTCAGAGCTTATTACAAGGGCTGGAGGAGATTGTTCACACTGGGCTGACAACTTCATCATGGAACGACGAGATAACTGAACAGAGTACAGACAGCTCAGAAAGTGGTGTGTTAGAATCTGCTGCTGAGGAATTTGATGACCCATTGGAGTGTTCAAGTGACACAGGAAATTTTCAGTCTGAAGATGAAGATGTGAGTGTAGAACTTGAGGGAGCAGTGGGTGGGGCTGTATTGCCACCTCCTTCAAGTAGATTGGATTCACAGGAACCCCAAAGTGAAGATGACTCAAAAACAAGTTTGTTGGATGAGCTGCAGAAAGAAATAGACCGATTACGCCTTCTCAGCCCAACAGGGGATGTCATTTCATTAACTGCTGGAGAAACAGAGGGAGAAAATGATACATCTGCCAACACTGAATCAGATGATGCTATTGCTGAGGATGTCAGGTCAGCAGATGCAAGACCAAGGTTAACTTTGCTTTCATCCCCTGATCAACCGGAACATGTTATTTCAACCAGGACCAACTCACCCCCACCTGGTCAGCAAACGCTTTCCTTGTCTTCTTCCCTAACCCTCCCTGAACACATTACACTTCTGAGCAACACAGCTGGCTTCAGTCTAGACAGCAGTCGGTTGTTGGCATCAAAGGACAGGACCAAGTGCTCTGCTGCAGATTGCAAGAGCCCAGACACATTCCCTTCTCTGAAATGCCAGTACTGCCGTCGCATCTTTTGCCCATCCTGCGCACCACTGGTTTTTTCATGTCGCAAGAGTGCAGTTGGACACAGTTTTGTGTCAAATCTCAGGAACCGAGGTCCAAGAACTTCCAGGGTCAGAAGCAAGGAAAGGAAGCCCAAAAAAGATGCAGATCCACCTTGGCAGTGTGGAATATGTACCATGCTGAACGGCCCTCAGGTGCTTGTTTGCCTTGGGTGCAGTTCCCTGCGTGAATTTGAGGCACAAGAAGGTCGCAATGTGTGTCCCATGTGTACTTTGGTTAATGAGCCTGGCAAAACCAATTGCGAACTGTGTGGGACAGATCTGGTCAGCAAAGGGCAGGTTGAAGTGGTCATTGAACCTGAATGAGACTTTTGTCTTGAAAAATGTTAATGTTACCAGATAGTGATAATCCTTTTTTAATCCTTAAAAAACTCAAGTGGTATTCTGCTTCTTTCACCATTACAATAACTATTATAATGCCACAAGTGGTTGGTATGTGTTGCCAAATCTTTGCTAAACTGGTTACCAGGTTTTTAGCTACTCTAGTGCATCTTAGATTTATAGCTGGGcgtgcatgaaaaaaaaaatgtttattaaagTATACCAGAGTCGAAATAGAAGAAAATGTAATCCAAAATCAATTTCTAGGTAAAGTAGAATTCATGACTGGAACTAGGTGTAAGTTGTGataaattctttatttt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q865W2	E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa OX=9823 GN=TRIM50 PE=2 SV=1
Q9HCM9	E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens OX=9606 GN=TRIM39 PE=1 SV=2
Q1XHU0	E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes OX=9598 GN=TRIM39 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007579 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052667 all species →	Family	E3 ubiquitin-protein ligase RING-type	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47156 all species →	PROTEIN CBG20824	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000022059.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.