Gene detail

Detailed information of ENSKKQP00000023768.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_015777040.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000027382

TGCCTTCAAAATCTGAAGGATTTGGCCTTGTTGCCCTTGAAGCCCTGTCAGCTGGTTTACCCATTCTTGTAGGCAAAAACTCAGGATTTGCAAGAGCAATAGAGGTCATTCCATTGGGATTATACAGTATAGTTGATTCAGACGATCCTGCTAAATGGGCTGAATGTGTTGAGGGTGTTCGTGTTAGACACAAAGTGGTCcttcaagaaaataaaatactgAAAGAACATTATGGCAAGGATTACTGTTGGAAGAAACAATGTGAAGAACTTGTTGACAGATTAAGGAAGATGGTTTATGGGTTGGATGGGAAACTTGGCAAAATACCAAGATCTAAGCAACAGTTGCCTTCAGTTTCATCAGAGACATTTCATGAACCTCATTCAGtgcacaaaaataaaattactgaAGTGGAGAAAGCCTCGGCAACATATGAAAACAAAGAGTACTTAAGAGAATTTGGAGagACTCTAATCACACTTCTTATTTCTGCACCACATCTAAATGAAGAACAATCAAAAGCTGTCCACACTATGTTGTCTATGCAGGTTAAAACTTACGTAGAAGTTCTTGATCATCCCACAGATAAACTAAAAGGATTGGGAGCCTTGGCTAAATTCATTACAGAAACCTACAAGGTGTTCTTTAAGCGTGCTGTTGTTGGCTCTCTAATAATCATTTTGAATTGCCAAAAGATAGAAAGTCTTGAGCTTCTATGGAATGACACTCTCTCTGGTCACCTTGATAAAGTGGCAGAGCGGTACCTAGTAACTAGTGAAATGAAGCAGAGCCTCAACCTGGAGACACTCAAATTAAAGGCAACCGTTGAAGAGGAAAACTACTTGAACTGTAGGAAGGTTCTCACGGGTTGTTCAGGAGAAGCAGACAGAACTCCTTTATTTTCTCAACAAGGTGGTCTTGATCCAGAAACTAGTATGATTGGGAAAGCTACAGCTGGAGTTGAAGAGGAAGTACTGgATAACCAAGAGGACACAAACTGGTTGACAAGAACAGAAAAGGCAAGACTTTCACATGACCCTCGTGCAAGTCCTTCAAATCGACAAAACAACACCTTTAGAGAGTTGAACATGGGGCCTTCAACTTCACAGCAGTGTAGTATCCTAGTGGAAGGTTTACCAAGTGATGCAACCAAGGATCTTGTGTTgaattactttgaaaataaaaggcGATCAAAAGGAGGTCCAGTCGTCGACGCTGACATGAATTCTGATTCCAGAACATGTCGTGTCATCTTTGAATCTCCAGATGACGCCATCAGAGTAGCCGAACACTCTCCTCACAACCTCTCTGGCACCTGTCTTAGTGTGTCTCTTATCAGAGAATTTGAGAAGGAGGAAGAGGATCACAGCATTGAAGAAAACACAGAGGAAGTGGAGGATAAGCTTACTATAATCGTAAGCGGCCTCAGGTCTACAACTACAAGGGATACCGTTTTTTATTACTTTGAAAATTCACGCAGATCGGGAGGAGGGGAGGTTCTCAACGTTGATTTTAATGAACAGGGAGATGCTGTGGTAACTTTCCAGGAGGTGAAAGATTCCAAAAGACTGCTGGAGGGCAGGCACAAGATAGATGGAACACCTATCGAGGTTAGAGTGCAGCCTCCCAAGAAAAAGGTACCTCCTGACCCTGTCATGGTACATGTGCAAGGCCTCAACCTCGAGAAGACAAGTAAAGACTGCTTGGAATTAAACTTGGAAATATTTAGCAACGTTGAATTGAAGGATATTCAATTTGGTTCCAACGATAACGCTCTTGCCGTCTTTGATAGCAAACCAGcagttaccatcatggatatcaaaaccttCCTGGACAATATTTACGAACATTCATGCTGTTCCGTGTGTGCCAACAGGTTCACTAATCCAAAAcagcttccttgtttgcacagtttctgccttcactgtctgcaaagaattcaagcaaccagcGGAATTCGAGACACTATTTTATGCCCCGAGTGTCGGCGAAACTTCACTATTCCTGGAAACGGTGATCTCAACACTTTGCCCACAAACTTTCGCCTGAACAGTTTGTTGGATGCTTTGCCCGTCACGGAGTGCAAAACGAGTGgcgtcaagtgtggaaattgcgac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000805 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR034464 all species →	Domain	PARP-10, RNA recognition motif 1 and 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000023768.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.