Gene detail

Detailed information of ENSKKQP00000023768.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_015777040.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000027382

TGCCTTCAAAATCTGAAGGATTTGGCCTTGTTGCCCTTGAAGCCCTGTCAGCTGGTTTACCCATTCTTGTAGGCAAAAACTCAGGATTTGCAAGAGCAATAGAGGTCATTCCATTGGGATTATACAGTATAGTTGATTCAGACGATCCTGCTAAATGGGCTGAATGTGTTGAGGGTGTTCGTGTTAGACACAAAGTGGTCcttcaagaaaataaaatactgAAAGAACATTATGGCAAGGATTACTGTTGGAAGAAACAATGTGAAGAACTTGTTGACAGATTAAGGAAGATGGTTTATGGGTTGGATGGGAAACTTGGCAAAATACCAAGATCTAAGCAACAGTTGCCTTCAGTTTCATCAGAGACATTTCATGAACCTCATTCAGtgcacaaaaataaaattactgaAGTGGAGAAAGCCTCGGCAACATATGAAAACAAAGAGTACTTAAGAGAATTTGGAGagACTCTAATCACACTTCTTATTTCTGCACCACATCTAAATGAAGAACAATCAAAAGCTGTCCACACTATGTTGTCTATGCAGGTTAAAACTTACGTAGAAGTTCTTGATCATCCCACAGATAAACTAAAAGGATTGGGAGCCTTGGCTAAATTCATTACAGAAACCTACAAGGTGTTCTTTAAGCGTGCTGTTGTTGGCTCTCTAATAATCATTTTGAATTGCCAAAAGATAGAAAGTCTTGAGCTTCTATGGAATGACACTCTCTCTGGTCACCTTGATAAAGTGGCAGAGCGGTACCTAGTAACTAGTGAAATGAAGCAGAGCCTCAACCTGGAGACACTCAAATTAAAGGCAACCGTTGAAGAGGAAAACTACTTGAACTGTAGGAAGGTTCTCACGGGTTGTTCAGGAGAAGCAGACAGAACTCCTTTATTTTCTCAACAAGGTGGTCTTGATCCAGAAACTAGTATGATTGGGAAAGCTACAGCTGGAGTTGAAGAGGAAGTACTGgATAACCAAGAGGACACAAACTGGTTGACAAGAACAGAAAAGGCAAGACTTTCACATGACCCTCGTGCAAGTCCTTCAAATCGACAAAACAACACCTTTAGAGAGTTGAACATGGGGCCTTCAACTTCACAGCAGTGTAGTATCCTAGTGGAAGGTTTACCAAGTGATGCAACCAAGGATCTTGTGTTgaattactttgaaaataaaaggcGATCAAAAGGAGGTCCAGTCGTCGACGCTGACATGAATTCTGATTCCAGAACATGTCGTGTCATCTTTGAATCTCCAGATGACGCCATCAGAGTAGCCGAACACTCTCCTCACAACCTCTCTGGCACCTGTCTTAGTGTGTCTCTTATCAGAGAATTTGAGAAGGAGGAAGAGGATCACAGCATTGAAGAAAACACAGAGGAAGTGGAGGATAAGCTTACTATAATCGTAAGCGGCCTCAGGTCTACAACTACAAGGGATACCGTTTTTTATTACTTTGAAAATTCACGCAGATCGGGAGGAGGGGAGGTTCTCAACGTTGATTTTAATGAACAGGGAGATGCTGTGGTAACTTTCCAGGAGGTGAAAGATTCCAAAAGACTGCTGGAGGGCAGGCACAAGATAGATGGAACACCTATCGAGGTTAGAGTGCAGCCTCCCAAGAAAAAGGTACCTCCTGACCCTGTCATGGTACATGTGCAAGGCCTCAACCTCGAGAAGACAAGTAAAGACTGCTTGGAATTAAACTTGGAAATATTTAGCAACGTTGAATTGAAGGATATTCAATTTGGTTCCAACGATAACGCTCTTGCCGTCTTTGATAGCAAACCAGcagttaccatcatggatatcaaaaccttCCTGGACAATATTTACGAACATTCATGCTGTTCCGTGTGTGCCAACAGGTTCACTAATCCAAAAcagcttccttgtttgcacagtttctgccttcactgtctgcaaagaattcaagcaaccagcGGAATTCGAGACACTATTTTATGCCCCGAGTGTCGGCGAAACTTCACTATTCCTGGAAACGGTGATCTCAACACTTTGCCCACAAACTTTCGCCTGAACAGTTTGTTGGATGCTTTGCCCGTCACGGAGTGCAAAACGAGTGgcgtcaagtgtggaaattgcgac

Protein

Uniprot

Uniprot term	Description
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047153	Family	TRIM45/56/19	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR034464	Domain	PARP-10, RNA recognition motif 1 and 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan