Gene detail

Detailed information of ENSKKQP00000025262.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029201392.2, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000029377

CTCCTTACAGATGAGTGTCGAGATTTTGCTATATATCTATGAAGACAAGTGGAAAGACATTGAAAAGAACGTGATTGAATCAGTACAAGCCATCGAAGACTTTGCATTTAAATGTGCTTCCTCTAACTTGAATTCCTCCAAAACccaggaaagaaaagaaaatcaacgTATTGTACATGACCGATGGAATGCTGCTGAGAGAGATCTTAAGTGAACCTGATCTTGCTGGCTACAGCGTCCTAATCATTGATGAAGCTCACGAGCGTACCTTACATACAGACGTCTTGTTCGGTTTGGTGAAGGACATCACTCGTTTTAGAAGTGACCTTAAACTGCTTATATCAAGCGCAACGCTCGATGCCGACAAGTTCTCTCAGGCTCCTGAAGCTGACTATCTGGAGGCTGTTGTGGTCACAGTATTACAGATTCATGTGACGCAGCCTACAGGTGACATCCTGGTATTTCTTACCGGCCAAGAAGAGATCGAGGCTTCTCAGGAGCTCTTGCAAGAGAGGACGCGCAAACTGGGTTCTAAGATTAAAGAGCTTATTATTCTACCAATCTATGCTAACCTGCCTTCGGATTTACAAGCCAAGATATTTGAGCCCACCCCTCCTGGGGGGAGAAAGGTTGTTTTGGCCACAAATATTGCGGAGACATCTTTGACGATTGATGGAATCATTTATGTTATTGATCCTGGATTCTGTAAACAGAAGAGCTACAATCCACGCACAGGAATGGAGTCTCTGGTGGTTACACCCATCTCAAAAGCctcagccaatcagcgtgcAGGCCGTGCAGGGCGCGTAGCAGCTGGCAAATGTTTTCGGTTGTACACCGCGTGGGCTTACAAAAACGAACTAGAGGAAAACACTATACCCGAGATCCAAAGAACGAATTTGGGGAATGTTGTGCTTCTTCTCAAGAGCTTGGGCATCAATGATTTGATTCATTTCGATTTCATGGACCCCCCTCCAGCAGAAACCTTGATTATTGCTCTTGAACAGCTCTATGCTTTAGGAGGACTGAATCACCACGGGGAACTGACTAAGCTTGGACGTCGCATGGCCGAGTTTCCGGTTGATCCAATGCTGTCCAAAATGTTAATTGCATCGGAGAAATACAAATGCGTGGAGCAGATTCTAACAATCACAGCCATGCTGTCCGTCAACAACGCCATCTTTTACCGTCCCAAGGATAAAGTCGTACACGCAGACAACGCGCGCGTGAATTTTTTCCGCGCTGGAGGTGATCACCTGACGCTGTTGAACGTGTACGACCAGTGGGCGGAGACTGGGTACTCGACGCAGTGGTGTTATGAGAATTTTATTCAACATCGCTCCATGAAGAGAGCACGTGATGTCAGGGAGCAGCTCGAGGGGCTAATGGAGAGAGTAGAGATTGCGATCACTTCCAATCCTCATGACGCGGTGCCGATTAGAAAGGCAATCACTGCAGGATACTTCTATCACACAGCCAGGCTCGGCAAAAGCGGTCAGTACAGGACAGTCAAACATCAGCAGACGGTAATGATTCACCCAAATAGCAGTTTATTCCAGGAGCAGCCCAGATGGGTGATTTACCACGAGCTTGTGTTTACGACGAAGGAGTTTATGAGACAGATTATAGAGATCGAGAACAAGTGGCTTCTAGAGGTGGCACCCCATTACTACAAGGCCAAGGAAATTGAAGACAGTTCTAGTAAGAAAATGCCCAAGACGGCGGGGGTGACGAAAGAGCAGGCCAGGTCGACAACGTAATGATGGGTTGCGTGACCCGGTCCCATGTCACACCAAGGACAGTTGTACCATAACTATCATTTCTTGAGAAGGTTCTTTCAAGCGAGGAATACGATCTTTGCTTTACCAAACGGTATTGTCTTGGAAAGACATTAGTACACTCGATCATGCCCAAGGCTGAGTGGTAGTATAGCGGTCAGCTCTTTTTAACACCACTGTGTTTCTTCAAAACAAGCATTTTGATTATGTTGGCATCACAGTGGCGAATTTTAAAACTATCCTCGATATCGTATGACCCTATGTCAACGCCTTTGGTGACTGGTTTTTGAGGCAAACGACCAAAGAGTAAAAGGAAACAATGAACCCTAGACTCATTACAGCTGCGTCCGAAAGCGACCTAACGGAGTAAGCAA

Protein

Uniprot

Uniprot term	Description
Q767K6	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa OX=9823 GN=DHX16 PE=3 SV=1
O60231	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens OX=9606 GN=DHX16 PE=1 SV=2
Q7YR39	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes OX=9598 GN=DHX16 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13117	DHX35; ATP-dependent RNA helicase DDX35	EC:5.6.2.6	Spliceosome	ko03041	deepkoala