Gene detail

Detailed information of ENSKKQP00000027331.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029187728.2, LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95628	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3
Q8BT14	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2
Q09818	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14570 all species →	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR034261 all species →	Domain	CNOT4, RNA recognition motif	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039515 all species →	Domain	NOT4, modified RING finger, HC subclass (C4C4-type)	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR039780 all species →	Family	CCR4-NOT transcription complex subunit 4	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12603 all species →	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000027331.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.