Gene detail

Detailed information of ENSKKQP00000027889.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_015779744.1, PREDICTED: chondroitin sulfate synthase 1-like [Acropora digitifera]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000032222

ATGGTGACAATGCGCCAGTGTATATTTCTGTTTCTTGGATTTATTATTGGCTTCCACATCACTCTGTTTGTTAGACAGAATCAATGCCGTTTGATTTATGCAACTCAGCTTCGACCGAAGACTTTAAGTGAAGAGCTTGGAAGCCGTAAATTTTTATTCGTTGGTGTTATGACCGCCGAACAGTTAGTGGAGACAAGAGCCAAAGCAGTTTACGATACATGGGGCAAGAATGTTCCAGGTACACTAACATTCTTTTCAAGCGGCGAAACTGGAAAGACACTTGGTTTACCGGTTGTAACTTTACCCAGTGTAGATGATACGTATCCACCGCTAAAGAAGTCTCTGATGATGATTAAATACATGCACGATTTCCACATCGATGAGTACGAATGGTTTATGAGAGCCGATGACGATGTGTACGTCCGAAACGACAGATTAGTTGAATTTTTACATTCTTTAAACAGTTCTGATGATATTCACTTGGGACACGCGGGTATAGGCGCAAAGGAAGAACTTGGAATGCTAAGCATGAATCCTGGCGATAACTATTGCATCGGGGGACCGGGTGTAATATTAAGCCGGAGTGTTTTAAAGAAAGTTGCGCCTCATTTGGAACATTGTTTTGGAACAGCGCCAACAACTCACGAAGATGTCGAAGTTGGACGATGCATTCAGCGTTATGCTGGAGTTAAGTGCACTTGGGCGTATGAGATGAGAACCCTTTTCTTTCATCACTACTCTGAGAAGGGACAAATATTTCACGGGGACCTCAATACCAACACCATTCGCGATGCCATCACACTGCATCCGATTAAAGAACCTGCTTACATGCATCGCTTGCACCTGCATTTCAAGAACGCGCGAATTCAACAATTGCAACACCAAGCTGTTAAACTGCAACGTGTCTTGAGAAATATGGATCACTTGATACAAGCTGAACAATCTCCACAGCCGATTCAGTCAAAGGTCGACCTTTTGGATCCAAGAGAATTTCATCGTCAATTACCGAGAAATGCAGCTGAACAATGGAACATGTTTACCTCAAGCTCATTTTACTTTGATGAGAAGTTGCGTTCTCCAGGGACGGGCATTCGCGGGCCATTAAAAATTGAATTCACAAATGCACTAGACAGAAATTCGGACTTTTTAAAAGAGGAGGCCAGGAGAATTCCAAACTCAGGGAATACGAAAATTCAGAAGATCAGTTACGGTTACAGAAGGTTCCATCCTTTGCACGGAGTTGAACACATCATGCAATTAACAATCAAAACTGAGAAAAAGGTCCGACTTGAAAACTCAGGAAAAACCCAGCAAATTTCAACTTCACGAAATAGATGGTTTCACACACAGCTACCATTTGGAAATCTGTTACACAACGTTGAGCCGCTGGCCGTTGCTTCATCGTATGTACACTTTCTCGTTCCATTAGAAGGACGTTTGGAAACGTTTCGTCGATTTATGAACAACTTTGAAGAAGTGTGCCTCAAACCACGGTTGTTGGTAAAACTAGTTGTAGCATATTCATCTCAGGTGTCTTCTCCAGATCAACACAAAGCTATATTGAAAGAATATCAAAATAAATACCCTTTGGCGGGTCTCATCTGGATTGACGTTAAGGGCAACTTTTCCCGCGGGATCGCTCTTTCTCTCGCGGCTGATCAATTTGATGAAACAGCGTTGTTGTTCCTATGTGATGTTGACTTGGTTTTCAGCAAAGCATTTGTCGATCGTTGTCGAATGAACACAGTTCTTGGCAAAAGAGTTTATTATCCAATCATGTTTAGTCAGTTTGATCCTGAATTATCTCACACTAACAACTCCATCCGTGGTTCGTACTACAACATAAACAAAGATGCAGGCATCTGGCGAACATATTCATATGGACCTGCCTGCCTACATCATCGAGATCTGCACGCTGTGGGAGGCTTTGACACAAGCATTAAAGGCTGGGGATGGGAAGACGTGGATTTATATGAAAAATTTGTCAACCATACTGAGATTGATGTATTCCGAGCAGCAGATCCCGATCTTATACATATTTATCATCCTGTAAAATGCGATCGCAATCTTCCAGATCGACAAATGACGCTTTGCAAAGGATCCAAAGCTTCGgggctagccaatcaaaagTCGTTAGTCAGAGCTATGATAGAAATATCAAAGAATACAAAACGTTCTCAACTCAAGTTATAA

Transcript

ENSKKQT00000032222

CATGCTGTGTTGCGAGGTGGGTGAAGGAGGAACTTGTTTCCGTTGCTGCTTTTCAAGTCTACTTTGAGAACTGCAGCCGTGTGTGCTTGGCACACGTCAACCGTTGAACGGTATACCTGATCATTGAACTCTTTGcgaaaggaaacaaagaaaaaacctCAAGATGGTGACAATGCGCCAGTGTATATTTCTGTTTCTTGGATTTATTATTGGCTTCCACATCACTCTGTTTGTTAGACAGAATCAATGCCGTTTGATTTATGCAACTCAGCTTCGACCGAAGACTTTAAGTGAAGAGCTTGGAAGCCGTAAATTTTTATTCGTTGGTGTTATGACCGCCGAACAGTTAGTGGAGACAAGAGCCAAAGCAGTTTACGATACATGGGGCAAGAATGTTCCAGGTACACTAACATTCTTTTCAAGCGGCGAAACTGGAAAGACACTTGGTTTACCGGTTGTAACTTTACCCAGTGTAGATGATACGTATCCACCGCTAAAGAAGTCTCTGATGATGATTAAATACATGCACGATTTCCACATCGATGAGTACGAATGGTTTATGAGAGCCGATGACGATGTGTACGTCCGAAACGACAGATTAGTTGAATTTTTACATTCTTTAAACAGTTCTGATGATATTCACTTGGGACACGCGGGTATAGGCGCAAAGGAAGAACTTGGAATGCTAAGCATGAATCCTGGCGATAACTATTGCATCGGGGGACCGGGTGTAATATTAAGCCGGAGTGTTTTAAAGAAAGTTGCGCCTCATTTGGAACATTGTTTTGGAACAGCGCCAACAACTCACGAAGATGTCGAAGTTGGACGATGCATTCAGCGTTATGCTGGAGTTAAGTGCACTTGGGCGTATGAGATGAGAACCCTTTTCTTTCATCACTACTCTGAGAAGGGACAAATATTTCACGGGGACCTCAATACCAACACCATTCGCGATGCCATCACACTGCATCCGATTAAAGAACCTGCTTACATGCATCGCTTGCACCTGCATTTCAAGAACGCGCGAATTCAACAATTGCAACACCAAGCTGTTAAACTGCAACGTGTCTTGAGAAATATGGATCACTTGATACAAGCTGAACAATCTCCACAGCCGATTCAGTCAAAGGTCGACCTTTTGGATCCAAGAGAATTTCATCGTCAATTACCGAGAAATGCAGCTGAACAATGGAACATGTTTACCTCAAGCTCATTTTACTTTGATGAGAAGTTGCGTTCTCCAGGGACGGGCATTCGCGGGCCATTAAAAATTGAATTCACAAATGCACTAGACAGAAATTCGGACTTTTTAAAAGAGGAGGCCAGGAGAATTCCAAACTCAGGGAATACGAAAATTCAGAAGATCAGTTACGGTTACAGAAGGTTCCATCCTTTGCACGGAGTTGAACACATCATGCAATTAACAATCAAAACTGAGAAAAAGGTCCGACTTGAAAACTCAGGAAAAACCCAGCAAATTTCAACTTCACGAAATAGATGGTTTCACACACAGCTACCATTTGGAAATCTGTTACACAACGTTGAGCCGCTGGCCGTTGCTTCATCGTATGTACACTTTCTCGTTCCATTAGAAGGACGTTTGGAAACGTTTCGTCGATTTATGAACAACTTTGAAGAAGTGTGCCTCAAACCACGGTTGTTGGTAAAACTAGTTGTAGCATATTCATCTCAGGTGTCTTCTCCAGATCAACACAAAGCTATATTGAAAGAATATCAAAATAAATACCCTTTGGCGGGTCTCATCTGGATTGACGTTAAGGGCAACTTTTCCCGCGGGATCGCTCTTTCTCTCGCGGCTGATCAATTTGATGAAACAGCGTTGTTGTTCCTATGTGATGTTGACTTGGTTTTCAGCAAAGCATTTGTCGATCGTTGTCGAATGAACACAGTTCTTGGCAAAAGAGTTTATTATCCAATCATGTTTAGTCAGTTTGATCCTGAATTATCTCACACTAACAACTCCATCCGTGGTTCGTACTACAACATAAACAAAGATGCAGGCATCTGGCGAACATATTCATATGGACCTGCCTGCCTACATCATCGAGATCTGCACGCTGTGGGAGGCTTTGACACAAGCATTAAAGGCTGGGGATGGGAAGACGTGGATTTATATGAAAAATTTGTCAACCATACTGAGATTGATGTATTCCGAGCAGCAGATCCCGATCTTATACATATTTATCATCCTGTAAAATGCGATCGCAATCTTCCAGATCGACAAATGACGCTTTGCAAAGGATCCAAAGCTTCGgggctagccaatcaaaagTCGTTAGTCAGAGCTATGATAGAAATATCAAAGAATACAAAACGTTCTCAACTCAAGTTATAACAAACGTTTAAAAACAAAGATCAGTGTTCGTGTTCATACGAATAATGTTAGTTAGGATCATTTGACAATAGAATAGTTTCTCCTCCTGGTGTTTTACTGATTCAACGTTTACAGTGAAAAAACATTTGGGACGAAGAACGATTTGGACAAGTATCGATTGTTTAACATGCAAGTGGATTGTGTCGTCTACGCGTTCCGATTGGTTTATTCGGAAGTGGCGCTAGTAAAGTCCTGTTCACACCATTTCGGTGAATATTTCATTGGTATCCGAGGAAGCCAAGAGCTCAACGTATTTTTGAGTGGAAACTATTTTATAAACTTGAAGAAAATATATGCTAAgcaattttacttttatttatggAAGAAGGAACTGAATTTGTAAAGGGGTGAGGAAGAATGGATGGTGTGATAATAATATTTGGATCTTGAGCAATGTtaattttagccatttttaggttggaaaacaataaatttttctgATTTGTTAAAGTTTTTTAGCAAACttgatctttctttcttttaacaTCTCCCTAATCTGATGGTGTTTTGTTTGTTACGTTCTTTTGAACAAGATCTTTTATCAACACGGTTGATGCAAGAGAGACCATTGTggtaaaatgaataattaagTCGTTGAGGAATTTAGGCctgatctccagatttcaaatccaccgccctaaccactcggccacgctgcctccttttGTAAAGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZQ11	Chondroitin sulfate synthase 1 OS=Mus musculus OX=10090 GN=Chsy1 PE=2 SV=2
Q86X52	Chondroitin sulfate synthase 1 OS=Homo sapiens OX=9606 GN=CHSY1 PE=1 SV=3
Q70JA7	Chondroitin sulfate synthase 3 OS=Homo sapiens OX=9606 GN=CHSY3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000773 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05679 all species →	CHGN	Chondroitin N-acetylgalactosaminyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR051227 all species →	Family	Chondroitin sulfate glycosyltransferase	Interproscan
IPR008428 all species →	Family	Chondroitin N-acetylgalactosaminyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12369 all species →	CHONDROITIN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008376 all species →	Molecular Function	acetylgalactosaminyltransferase activity	Interproscan
GO:0030206 all species →	Biological Process	chondroitin sulfate biosynthetic process	Interproscan
GO:0047238 all species →	Molecular Function	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity	Interproscan
GO:0032580 all species →	Cellular Component	Golgi cisterna membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13499	CHSY; chondroitin sulfate synthase	EC:2.4.1.175 EC:2.4.1.226	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.