Gene detail

Detailed information of ENSKKQP00000028365.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029196963.2, E3 ubiquitin-protein ligase RNF113A-like [Acropora millepora]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000032700

AAGCCAATTGACCTATCCTAGAGACGAGGCTTTGGTCGCGATGGATTGGACTCCGAGATATTCAAAATGTCGGATGGAACGAATGAAGACGTGCAAAATGGCAAACCCATTTGTACGTTCTTTAAAAAAGCAAACAGAAATCGAAACGTTCGCAAGCGAAAAGTGGAGAAATCGGATAGTGAAGACGATGAAGAAACAACCGTGGttcggaaagaaaaaaagacgtTTTCAAATAACCCAATGTTCCAGAAAACGGATGGGTTTAACTCAAAATCAATCCGCGAGATAACAGACAAAGATATTGATGTTTCTTTCAAATCGACGCGTTCTGCTATGCGAGCAGGTCCTGAAGATCTTGGAGCTACATCAATTGTGGAGATTGATACAGAGTTTGATAGAGATGCACAAGCTTTGTTCGAGAAGAGCTTGAAAGCAGACAAGGAGAGAAAAGAAGAAGATAAGGATAGCAAACGATATCGAGGGTTGAATAACTACATGACATTCTATGAGAAAAAAGGAACGGCACAGGGGAACGCATCCAGTGGAATGGTTAGaCAAGGACCAATCAGAGCTCCAGCAAATCTTCGTGCTACAGTACGTTGGGATTACCAACCAGATATTTGCAAAGACTTCAAAGAAACTGGCTTCTGTGGGTTTGGTGACAGCTGTAAGTTTATGCACGATCGCAGTGATTACAAACATGGCTGGCAATTGGAACGAGAATGGCGTGAGGGAAATTATAGCAAACAAGATCCACATGCTTATGAAATTGAAAGTGATGACGATGATCTCCCATTTGCTTGCTTTATGTGCCGTGAATCATTTAAGAACCCAATTGTCACAAAATGCAAGCATTATTTTTGTGAAGATTGTGCGCTAAAGCATTACAAAAAGAGCAAACGTTGTTATGTGTGCGGAGTGCAGACCAATGGCATGTTCAATCCTGCAAAAGATCTTTtgaagaaattacaaacaatggAGGGCAAGGGGAgaaatgatgatggtgatgatgagaGGGAATAAAGGCTGATTTGGAATCCTGACtattgacaaagaaaaatattccATGTATCAAACTACTGTATATAGATTATGATTGTTGTCTGATCTGACTAAtggttgacaaatttctcactGAGAGATTATAAAAATTGCCTCAAAGTTAATAAAGTATGCACAGGTGCATTGCTGaacagctaaaaaaaaaaggccacacCAAGGCCCTTTGACATTCTGTCATTGCCTTCCTCATGTAGCAAGCATCATAGCATTGCAGAGACTTTTGTAATTTTAAACTTGTCAGCCAATCATTAATGCAAAAAAAGTTGTGAAACCCAGGCAGTAGTATTATTTACATGTCATAGTTAACAACAGACCTTTGCACGTCGTACTGAGAAACCTCAGGCTCATGTGATAACTAAATGCTTGTCatagaagaaagaaagaaagtaatGGGCCTGGTTGCAGTGCCTCCAGATGCATTGCTGGAACATTGCACCTTCATATTGCTTCTCAAGATTGCATCCTGGAGATCTTTCAGACAAGCATTGCAATAACTGTTCCCCTGGCCTCGGTTGTTTATACGGTAGATGGCACTATCCACCAGACAAACCCTCTCCAGAGGATAAGCACCAGAAAAGTCAATTGAATTATCCAGTGGGTAGaaatttatccaatggatggCATTATTCATCCATGAAATAAATAGGGCCAGGCAGGTAGGGAGAGAGACAGCAGCCCCCTACATCATACATGACAGATCCCTTTGAAAGTAGGGTAGTTCACTCAATAAGATCTTAGGAAGAAAGCCTGCACGATAGGAAGAGCACTGGTCCCTCCTCATTTCCCCTTCATTATGGTGCAAATGCGCATGAGCAgtacaaaataaatgaatattttatGTGCGCTTGTGCGTTAGCTGAATTATTTCGTTATTGGTAAAAATTACGTTATCTGCTATCTTTACCTGTAGCTCTAACATAAATGGCGACAGATTTCAATTCTTCATTGCTATTAGATGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15541	E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1
Q67ER4	E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1
Q8IZP6	RING finger protein 113B OS=Homo sapiens OX=9606 GN=RNF113B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008223 (this species only)
Transcription factor family	zf-CCCH · all TF in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039971 all species →	Family	Pre-mRNA-splicing factor CWC24-like	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12930 all species →	ZINC FINGER PROTEIN 183	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005684 all species →	Cellular Component	U2-type spliceosomal complex	Interproscan
GO:0034247 all species →	Biological Process	snoRNA splicing	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13127	RNF113A, CWC24; RING finger protein 113A	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.