Gene detail

Detailed information of ENSKKQP00000029094.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: PFX23228.1, Histone H2A [Stylophora pistillata]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27325	Histone H2A OS=Urechis caupo OX=6431 PE=3 SV=2
P35061	Histone H2A OS=Acropora formosa OX=126732 PE=3 SV=2
Q6PV61	Histone H2A OS=Penaeus vannamei OX=6689 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000315 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan
PF16211 all species →	Histone_H2A_C	C-terminus of histone H2A	Family	Interproscan
PF00538 all species →	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032458 all species →	Conserved_site	Histone H2A conserved site	Interproscan
IPR032454 all species →	Domain	Histone H2A, C-terminal domain	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR005818 all species →	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR002119 all species →	Family	Histone H2A	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23430 all species →	HISTONE H2A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006342 all species →	Biological Process	heterochromatin formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11251	H2A; histone H2A	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.