Gene detail

Detailed information of ENSKKQP00000033085.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_044167376.1, lysyl oxidase homolog 3A-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000038444

ATGTACATAATGGCGAACTGGCTGTGTTTGCTCGGAGCTGTACTGCTAACGGAAGGCGTTGAAGGGTTCATAGAGGTCCGTCTCATAAGAGGAAAACATCGATTTGAAGGCATAGTTGAAGTTGAACACGATGGCGAGTGGAGAGGTATCTGTGACCATGGATGGGATAAACACGCTGCTAATGTTGTATGTCGAATGCTGGGATACCCTGGAGCTCTGCGTTATTACAAAGGGCCAAAACCATTCGGTCGTGGAACCACGTCTTACTGGTTGGATGACATCAGATGCACTGGTGACGAGAAATCTATCGCTCAATGTTCTCACAGAGAATGGGGCCAACACAACTGTCTAGCCATCAACCCTGCTTCGGTCAAGTGTGAATTAAATGCACATGACAAGATAATAACCCCTGAGCCCGTAAAGAGCGCCGCTGGTCGGGTTCAAAAAGAATTCTTGAATATCGATGTCAGGCTATTGGGTCCCGCTGTCGATGACTACATCTCCGAGGGTATTGTCCAAGTAGAGCTTGCAGGAAGGTGGGGCTATATTTGTCCCTCCAACTGGACACCTGTGAACTCGTACGTTTTGTGTGGTCAGCTTGGATTCCCACACAGCGAGGTACAGCATTCGTACTCGACGAAGATTCAGGACCTGGCACCCGTGTATTGGCTCGACCAAGTGATGTGTAGAGGATCTGAGTCGTCTATTTTATCATGTGGACATGCTGGATGGGGTAGCTCACAGTGCGTGGCTGGTACAGCATTAACGATCAAATGTGTCCGTCGAGGCCTGGAAAAGCCACAAGGTGTTAGACTTCGAAGTGGGGCGCAGATCTCCGAGGGACGAGTAGAAATAAAGTCCCGTGATGCCTGGGGGACAATCTGTGATGATCACTGGACCCTAAAAGAGGCAAATGTGGTCTGCAGATCCCTGGGGTACGGGTCAGCAGCAATGGCGACAACCAATGCATATTTTGGAAGAGGAGTTGGAAAGATTATGATGGATGATGTTTATTGCGGAGGAAATGAGAAAAGTGTCACGAATTGCCGACATCGCGAATGGCACAAGTCAAACTGTGATCACTATGAAGATGCTGGCGTCATATGTCATGCGCCAAAGCTTCAAGGCCACGAGATAAGGCTTCAAGGTGGCTCCCACCCAAAGGAGGGTCGAGTGGAAGTATTCCATGACAACAAATGGGGATCCATTTGTTCTGATGGCTGGGGGTTGGAGGAAGCCATGACAGTTTGCCGACAGCTTAACCTGGGTTTCGCCAGTGAGGCAGTTATAAATGACAGGTTCCATGGCAGGGACCAAAAAGTAATTATGTCAGGAGTGACGTGTCGCGTTGACGCAATCTCAATTTACAACTGTCAACACGATCCATGGACCAATGCCACGTGTAGTAGCAAGGGAAGCTTAGCAGGGGTCGTTTGTGTTGATGAATTACCAGATATTGTTCCAGACACCGAAGTTCTTCAACGCGACATGAAAATAAATTCCATACCTTTGCAACACCTCAGGTGTCCATTGGAGGAAAATTGCCTGTCAGAAACAGCCGACTATGAGATTAGTGACATGAGATACTACATGCGTAGACTGTTGCGGTTTAGCGTGAAAACTGATAACGTAGGATTGGCCGATTTTCGTCCAAATGTACCCAGATCCAAGTGGAAATGGCACAAATGTCATAAGCATTATCACTCAATGGAGACATTTTCTTCATATGACCTCATTAAGAAAGACAGCGGCAAAAAAATGGCTAAGGGCCACAAAGCCAGCTTTTGTTTGGAAGATACCAATTGTTACGAGGGATTCGATAAAAAGTTCAATTGCTCCATGGACGGAGGTCAGGGCATATCTCCGGGATGTTATGATCTCTACGGTTGGAGAATCGACTGCCAGTGGGTGGACTGCACGGACTTTACACACGGTGCATTTTATCTGCGAGTGCACATAAATCCAGGAAACAGGGTGGCGGAATCGGATTTCAGAAACAACATTGCAAAATGTCGCGTGTATGACTATGGAAGCTGGGTCATAAGCAACTCTTGCGCTATTGAGGATTGTGACAGTGGAGTTGACACACATGGCGGTAATTCAAGAGGAAATTGTTGTGAGTTTCCATTCTTTTACAATGGCAAATTATATCACGACTGTACCACAGATGGCTTTATCAAGCGATGGTGCTCAACAACATTCGATTTTAGAAGAGACGGTAAATGGGGGCTTTGCTACGACTAG

Transcript

ENSKKQT00000038444

AAGTCTTTTGTTATGTAAGCTCCATTGTATTTTCCTTTTGACCAACACTGATTTGTAAAAGCCTCCTAATGAGAGAGCCTATCCGGTTTCCCCTCTGCGGCACGGCTGATGCATTGTAGCAGCAACAGCCACTCGCGATATCAAAGGAACACTCCTTTCTTAATTGGCTGCGCTCAGCTGTGTGCGCAGGTTGCGAGATTTGGTCGTCGATTCATTACAAGCGACAGACTGTTGTTTGAAAACAGTATCTCACCCTAAGGTCCAGACAAATAACGACTAGCTAGCGACTTCAAACAGCAATGTACATAATGGCGAACTGGCTGTGTTTGCTCGGAGCTGTACTGCTAACGGAAGGCGTTGAAGGGTTCATAGAGGTCCGTCTCATAAGAGGAAAACATCGATTTGAAGGCATAGTTGAAGTTGAACACGATGGCGAGTGGAGAGGTATCTGTGACCATGGATGGGATAAACACGCTGCTAATGTTGTATGTCGAATGCTGGGATACCCTGGAGCTCTGCGTTATTACAAAGGGCCAAAACCATTCGGTCGTGGAACCACGTCTTACTGGTTGGATGACATCAGATGCACTGGTGACGAGAAATCTATCGCTCAATGTTCTCACAGAGAATGGGGCCAACACAACTGTCTAGCCATCAACCCTGCTTCGGTCAAGTGTGAATTAAATGCACATGACAAGATAATAACCCCTGAGCCCGTAAAGAGCGCCGCTGGTCGGGTTCAAAAAGAATTCTTGAATATCGATGTCAGGCTATTGGGTCCCGCTGTCGATGACTACATCTCCGAGGGTATTGTCCAAGTAGAGCTTGCAGGAAGGTGGGGCTATATTTGTCCCTCCAACTGGACACCTGTGAACTCGTACGTTTTGTGTGGTCAGCTTGGATTCCCACACAGCGAGGTACAGCATTCGTACTCGACGAAGATTCAGGACCTGGCACCCGTGTATTGGCTCGACCAAGTGATGTGTAGAGGATCTGAGTCGTCTATTTTATCATGTGGACATGCTGGATGGGGTAGCTCACAGTGCGTGGCTGGTACAGCATTAACGATCAAATGTGTCCGTCGAGGCCTGGAAAAGCCACAAGGTGTTAGACTTCGAAGTGGGGCGCAGATCTCCGAGGGACGAGTAGAAATAAAGTCCCGTGATGCCTGGGGGACAATCTGTGATGATCACTGGACCCTAAAAGAGGCAAATGTGGTCTGCAGATCCCTGGGGTACGGGTCAGCAGCAATGGCGACAACCAATGCATATTTTGGAAGAGGAGTTGGAAAGATTATGATGGATGATGTTTATTGCGGAGGAAATGAGAAAAGTGTCACGAATTGCCGACATCGCGAATGGCACAAGTCAAACTGTGATCACTATGAAGATGCTGGCGTCATATGTCATGCGCCAAAGCTTCAAGGCCACGAGATAAGGCTTCAAGGTGGCTCCCACCCAAAGGAGGGTCGAGTGGAAGTATTCCATGACAACAAATGGGGATCCATTTGTTCTGATGGCTGGGGGTTGGAGGAAGCCATGACAGTTTGCCGACAGCTTAACCTGGGTTTCGCCAGTGAGGCAGTTATAAATGACAGGTTCCATGGCAGGGACCAAAAAGTAATTATGTCAGGAGTGACGTGTCGCGTTGACGCAATCTCAATTTACAACTGTCAACACGATCCATGGACCAATGCCACGTGTAGTAGCAAGGGAAGCTTAGCAGGGGTCGTTTGTGTTGATGAATTACCAGATATTGTTCCAGACACCGAAGTTCTTCAACGCGACATGAAAATAAATTCCATACCTTTGCAACACCTCAGGTGTCCATTGGAGGAAAATTGCCTGTCAGAAACAGCCGACTATGAGATTAGTGACATGAGATACTACATGCGTAGACTGTTGCGGTTTAGCGTGAAAACTGATAACGTAGGATTGGCCGATTTTCGTCCAAATGTACCCAGATCCAAGTGGAAATGGCACAAATGTCATAAGCATTATCACTCAATGGAGACATTTTCTTCATATGACCTCATTAAGAAAGACAGCGGCAAAAAAATGGCTAAGGGCCACAAAGCCAGCTTTTGTTTGGAAGATACCAATTGTTACGAGGGATTCGATAAAAAGTTCAATTGCTCCATGGACGGAGGTCAGGGCATATCTCCGGGATGTTATGATCTCTACGGTTGGAGAATCGACTGCCAGTGGGTGGACTGCACGGACTTTACACACGGTGCATTTTATCTGCGAGTGCACATAAATCCAGGAAACAGGGTGGCGGAATCGGATTTCAGAAACAACATTGCAAAATGTCGCGTGTATGACTATGGAAGCTGGGTCATAAGCAACTCTTGCGCTATTGAGGATTGTGACAGTGGAGTTGACACACATGGCGGTAATTCAAGAGGAAATTGTTGTGAGTTTCCATTCTTTTACAATGGCAAATTATATCACGACTGTACCACAGATGGCTTTATCAAGCGATGGTGCTCAACAACATTCGATTTTAGAAGAGACGGTAAATGGGGGCTTTGCTACGACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4F6N6	Lysyl oxidase homolog 2 OS=Xenopus tropicalis OX=8364 GN=loxl2 PE=2 SV=2
F1RD85	Lysyl oxidase homolog 3A OS=Danio rerio OX=7955 GN=loxl3a PE=2 SV=1
Q96JB6	Lysyl oxidase homolog 4 OS=Homo sapiens OX=9606 GN=LOXL4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001610 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan
PF01186 all species →	Lysyl_oxidase	Lysyl oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR001695 all species →	Family	Lysyl oxidase	Interproscan
IPR019828 all species →	Conserved_site	Lysyl oxidase, conserved site	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR050912 all species →	Family	Lysyl oxidase-like protein	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817 all species →	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016641 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	Interproscan
GO:0004720 all species →	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0018057 all species →	Biological Process	peptidyl-lysine oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000033085.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.