Gene detail

Detailed information of ENSKKQP00000036373.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_015753495.1, PREDICTED: regulator of nonsense transcripts 3B-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000042053

TGGTCAGCTTGTATGTGCATCACGAAAAGATTGTCATGTGTTGTGCGCAAACTGTCCTTGGTCATcttcaaacaaaatggcgtGATGTAGTCCCACCTCTAGCCATTAATTGCACCTGTAAACATTGGATATAGAATGGGAAAAAGCGACGCTGAGAAGCCAGGCAGCTCGTCCAAGAGCAAGAAGGAAAGGACTTTGTTTCCAACAAAGGTTGTCATTCGTCGCCTTCCTCCATCGTTAACCGAAGATCAGCTAAGGGAGGAATTTGGTGGTTTCCCTGAGCAtgactttttttactttgttgGTGGTGATATGAGTTTTGGTCCCATGTGTTTCTCAAGGGCATACATCAACTTTAAAAATAGAGACGACATCGTAAATTTCAGAGATCAGTATGATGGATACCGTTTTGTGGATAACAGAGGTGTAGAGTACCATGCTGTTGTCGAATATGCTCCTTTTCAAGGAGTtccaaagaagaaaagcaaaaaggaTCCAAAGAATGGAACTATTAGTGAAGATCCTGACTACTTAGCATTTCTGGAATCTCTCAAGGAAACCAGTGAACCACCTGCCAGCATTGAAGCACACCTAGAAGAAATTGAAGCAAAAAAAGCTTCCTCCATTTCCACAAAGATAAGTACACCATTACTAGAGTATGTGAAAATGAAGAAGAGTTGCCGTGGTAGACCAATTTCTGCTCGTGCAATTTCCGAGAAGAAAAGAAGACttgaaagagaagagctctccAGGtCACCAAAGAAAAGTGCATCATTAAGCTCTTCTTCCAACAAAGACTCTGGAACAAAGAGAGGCCACTCGTCcccaaaagaagaaaaagcaaaggACGAGAAAAAAGATATGAAAAGCAAGGAAGATGGTCGCAGAGAGGAAAAGATGGATAAAAAAGGTAGCAAAGAGACAAAGGTCAATCCACCATCAAGGGACAAACAGGAGTCAAAATCTCCATCTAAGGGAAAAGAAGAGAGGACTAGACCTGAGTCTGGAAGATATGGAAAGCGTCCTGACAGGCGCCGTTCTGAAGACAGGCGTCAAGATGTCAGACGGGCCAGTAATCATAAAGATCGCAGAGATAGCACTGACAGAGAAGTGACAGACCGAGGACAATACGAACGATATCGGAAAGAAAGTGGGAATGAGAGTAAGCAAAGAGATTTGAAACCAGGCAGCCGTAGGGACACAGGGTCTGAAAGTGAAATAAAGGATAGAGAATCATTGTCAAAGAAGTACAATTCAGACAAGGATATAAAGCAGGGCAAGGAGCAAAGTAGTTCAACCACGAGGGAGTTGAAGGAAAGCACAGCAGTATCTGTTGAAAGTAAACATCCCACAGAAGAAGCCAAGGGACCTGCAAAAGACGAGAAAAAACGCAGAGAATCTGAACGACGCATTCGCAACAAGGATCGTCCCGACAGAGCAATTTACCAGCCAAGAACATCCTCTCGTGGGGGCCCAAGACAAGACACACCTAAAGCAATGGATACTGTAACAGACAAGGAAAAAggcaaaggaaaggaaaagggTCATGAAACAGATCATGATACACGAAGATAGAGACTCTAAGCAATAACTGTGACTATCAAAGTGATGAAAGAAGAGAAATATGTGAAGATAAGGCATGAAACATGAATTGGcatcaagaaaaacaacagaTGTTAAATCAGAAGCAGTCAAGTGGTTTTTGCTGTGCCAATGATTTATTTACTTCATTGTAGATATTAACAAACTACCACCGAAAATGGTAATAAAGTTTCAGTGACATTGTTTGTGGTTCACAAAAAACATGACTTTGTTGCATTATTTTCAGAAACCATTTCGACTTTCTTGTAACTGTTAGACATGAAAAAGGCCATTTATTCATACACTtatcaaataaaataatacatcaAAATAATGTTCTTACAGTACATTGCATCTCCCTTTCCTATTTTTTATTGACAATAGACCAGTTGCCAAATACTATATGTGTTTTATAAACTTGATAACATCATCATAAACAGCATCAGAGATGCTCCTTATTGTTTCAAAAATCAGGAAAGCATGATATTGTGACTTATATTCACAGTGAGACACATCAGCACTATCCTTCTGCAAATGTTTCCTGTACAAAACTATGTCATCTCTAAGAATATCAAATTCCCCATCAACCAATAGGGTTTTTGGCAACCTCATCACAATATCTGCCATATTTCCTTCATACAAGCATACGAAGTTCGGAAAAATCAATGCAGCTCCCAGACTGTTGAC

Protein

Uniprot

Uniprot term	Description
B0S733	Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2
F1QNX7	Regulator of nonsense transcripts 3B OS=Danio rerio OX=7955 GN=upf3b PE=2 SV=1
Q9BZI7	Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03467	Smg4_UPF3	Smg-4/UPF3 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039722	Family	Nonsense-mediated mRNA decay protein 3	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR005120	Domain	UPF3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14328	UPF3, RENT3; regulator of nonsense transcripts 3	-	Messenger RNA biogenesis	ko03019	deepkoala