Gene detail

Detailed information of ENSKKQP00000038871.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029207639.2, G patch domain-containing protein 1-like [Acropora millepora]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

ENSKKQT00000045115

ATGGCTGACAGCGACGAGGATGACACTCTTGCAAGTTTTGGAACACCTTTTGAGCCTTTGGAAGAAGATGCTCCGCGAAAGAAAGCTATCCCAGTACACGAACAGATCGTTACAGATTCTGAAGGCAGAAGACGATTTCATGGCGCCTTTACAGGGGGATTTTCTGCAGGTTATTTTAACTCTGTCGGAACTAAAGAAGGGTGGCAGCCGTCAACTTTTGTATCTTCCCGTTCAAAAAAATTTGAGCCCAAGGCCCAGAGACCTGAAGACTTTATGGACGATGAGGATATGGGAGAGTTTGGGATTGCTCCCAAGCGTATCACGACGACAGAAGAGTTTTTGTCAAAGGAACAAGAAAGTGATAATCGCCGGAAGAGGATGGGGGCAAGTTGGGAGGCCCCTGGAGTTATTTCTGGGGATCGTGTATTAGAAGATCTTGTTTTACCAGTGAAGATGTCTGTTGGAGTCGAACTGTTGAAAAAGATGGGCTGGAAAGAAGGGCAAGGAGTTGGACCTCGTGAGAGGAAGACGAAGAAAAAGGTATATGGTTGTTCTCTTCCCTCGTCATTGCAAACAGATGTCATTGAAGAGGAGGAAGATATCTTTGCGGTTGGTCTTCTCTTTGCACCAAAAGATACTGAAATCTTTACTTTCACACCTAAAGATGATAAACATGGGCTTGGCTACAAGGGATTGGATCCTTCAACAGCACTTTTTGGAAGAGCAGACATACTTGGTATCAATCCTGGGTCGAGAAAAAGTGGAAGGAGGGGCTTCTCTGGGGAGGCATTTGGTGTTGGTGCTTTTGAAGAGGATGATGGTGATATTTATGCGGCAGATCGCATGGCCAACTACGACCTGGAGCTAACCAGTGATCAAAGCACAGGTTTGCATGGTTGGACTGGCCCTCCAAAGGAAAATAAGAGAGGTGGTGAATTGTCTATCTTCACTATCACTGCCAAACACATGGACGCCATTCAATCATTTCCTCCACCGGTTGTTCCACGTGATTTTGACGGCAATCACAAGTTTGACAATTTGACATCTCCCAAGGAGGCTTCACAAGAAGGGAAGACACTCACTGCTGCAGACAGAGGAGCAATACTAGGAGAAGAGCCACTTCCAACGCCGAAAAAGTCCGTCTTCGAGTACATGTCAAAAGAGGACAAAGAGAGAGTCATGTCATCGAAGTTGGTGACACCCAAACCTGCCAGTACAGCATCTGCCACATCTACCTATTCTTCAGCAACTGTGTCTGCACCAAGGAAGTGGTCCTCAAATGTGCATTTTGGTTCGAACAGTTTCAAGCCCTTTACGAAAGATCCAGCTAAACAGGCCAGATATGAGGAATTCTTAAAGGCAAGGAGTACTGAACAGACTTGCGATGTATTGACAGAATGGGAGCGAGAGCGAGAAAGAGAAGAATTTAGTCGCGCCGCGGCACTATACCAGCCTCTTAGCTCGACACTAGCGGCGCGATTTACTTCTGCAAAGCAGAAAGATGACCATACAACAGTTTATGAAGAGGTGCCCGCCCAGGAGGCTTCAGATATGTCCGAACAAACCAAAGCTGCCAGCATGAAAATGTTTGGAAAACTAACGCGTGACACATTTGAGTGGCACCCAAATAACGTTTTGTGCAAGCGATTTAATATTCCTAATCCATATCCTGGGTCTGATGTGATTGGAGTGCCAAAAATGCGAAGGGCCAAGTTTTCACTCGGTGATTTTTTAGCACCACAAACTGAAAAACCGCGCGAAATACTAGCATCTAGTGAACTTGAGAAGGAAAGGCCCGATAGCCCAGCGGGTCAAATTGCTTCATTGGAAGTCTCTGCGAAGTCTTTCGAACCAGCAGCTTCCGTTCCCGAAGAGACTGCGAGTAATGGGGTGACGAATGAAGCCATAACTATTGGtggtaaaacaaaacaagatgaTACTAACGCAGTCCCTCAGAGACCTCCCATGGATTTATTCAAAGCAATATTTGCTGATTCTTCGGAAGATGAATCCAACGAAAATGACAAAGATGACGGCGAAGAAACCGAAGTTCCTCCGAATCCGACCGAAAGCAAGACCACCCCTTCGTTTCAGGTCGCTGACCAAACTAACGCAGACAATAGCGTGTCAGACGTGTTCGCGGATCTCAGTGAAACTTCAAAGGAAATCTTAGCCCGTGGAAATGAGAAAGAAGCTGAAACAACATTACATACTGACGTCCAACAACAGCTGGAATCATCTGATTTTCAGTATGGTCCGACCCTTCCGCCTGGTCTTCGTTACGGCGTGGCGTCCTCCTTGGGCCACGAAAAACGTTCCGAACACGGTAGTGGCGATAGTTCAGAGCACAAAAGTCGCACGAAAGAACAAACGAATAGCACAAAAACACGAAATTCCGATTTTAAAACGTCGTCGCGTTATTCGTATGAAGAAAAACATTCGGGAAAGAAGATTCGTTGGGGAGATTCACAGGGTAATAGGCACAGGAAAAAAGACATGGGTGGTAAAGATGAGGAGACAGTGAGGAATTTCAGTGAGTCTTCAGATAGTGATGAGAATAACAGATCAAGACACAAACATAAACGAAAGGAGAAGAAACGCAGTCATCGGCATAAACATACAAAAAAGAGCAAACACCGTGATGAAGAAAGAAACAGTGAGAAAAAAGTTTCTGAAAATCGGTCGAAACAATCAGCCCATGATATCACTGTGTCCAATGACAAGCAGATTCTCGACAAATTGAAGAACCTGCAGAATTTAAAAGATGGGAAAAGAATGAAAGCGATTGATTTCATGTGA

Transcript

ENSKKQT00000045115

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24K12	G patch domain-containing protein 1 OS=Bos taurus OX=9913 GN=GPATCH1 PE=2 SV=1
Q9DBM1	G patch domain-containing protein 1 OS=Mus musculus OX=10090 GN=Gpatch1 PE=2 SV=1
Q9BRR8	G patch domain-containing protein 1 OS=Homo sapiens OX=9606 GN=GPATCH1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007055 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07713 all species →	DUF1604	Protein of unknown function (DUF1604)	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR011666 all species →	Domain	G patch domain-containing protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13384 all species →	G PATCH DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13123	GPATCH1; G patch domain-containing protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.