Gene detail

Detailed information of ENSKKQP00000039177.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029186371.1, eukaryotic initiation factor 4A-I-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000045426

CACGACAGAAGCAAGTTTTGCTTTCTCTTTCATGATCAGCGTCGTGATATTTTTAGCCAGACAATTCACGTTTTACCACTTCTTTTTCCTTACACATCACTTAACATCAAACCtacagagtgttttcacgtgacgtcaaagcggccatgttggtgttcttAAACAAAGGAAAGGCGACCATTTTGATGTCCCCAACTAATTCTCGAGGGCTGAACTCCATTCTTATgGAACCCTGACTCCGAACGGTCTCGAGAAGAGAGAAATGGACCACCAGGAATGGACACTGAGGGAGATATCGAGTCAAACTGGGATGAAGTTGTCGACAGTTTTGATAACATGAACTTGAAAGAATCGTTACTTCGAGGTATCTATGCTTACGGGTTTGAAAAACCATCAGCTATTCAACAGAGAGCAATCGTACCCTGTTGTAAAGGACTTGACGTCATTGCTCAAGCTCAGTCTGGTACTGGAAAAACTGCAACATTCTCAATTGCCATCCTTGAGAAGATTGACGTGTCTCTTCTAGAATGCCAAGCACTTGTCTTGGCCCCAACAAGAGAGTTGGCGCAGCAGATTCAAAAGGTAGTTATTGCTCTTGGTGACTACATGGAAGCAAAGTGCCATGCTTGCATTGGTGGTACTGATGTCAAGGAAAATATGCTTGCATTAGAAAAAGGACTTCACACTGTAGTTGGAACTCCAGGCAGAGTTTATGACATGATGAGTAGACGAAGCCTTGATCCCAGAAGTATCAAGATGTTTGTGTTGGATGAAGCTGATGAAATGTTATCAAGGGGCTTCAAAGATCAAATCTATGATATTTTTCGGAAATTGCCAACTTCAGTACAAGTTATTTTGCTTTCTGCGACAATGCCTGCTGATGTGCTAGAGGTGACTAAAAGGTTTATGCGGGATCCAATTCGAATCCTTGTAAAGAAAGAGGAGTTAACCCTTGAAGGTATCAAGCAGTTTTACATCCATGTGGAACGAGAGGAATGGAAACTTGATACCCTGTGTGACTTGTATGAGACTTTGACTATCACTCAGGCTGTAATTTTCTTAAACACAAGAAGAAAAGTAGACTGGCTTACAGAAAAAATGCATGGAAAGGACTTCACAGTGTCAGCCATGCATGGTGATATGGACCAAAAAGAGAGGGATGTAATCATGAGGGAATTTCGTTCTGGTTCGAGCCGTGTGCTTATCACTACAGACTTGCTGGCACGTGGTATTGATGTACAGCAAGTGTCCTTAGTTATTAATTATGACTTGCCTGGAAATCGTGAAAATTATATTCACAGGATTGGTCGTGGTGGTCGGTTTGGACGTAAAGGTGTGGCCATTAACTTCGTGACCACTGATGATGTTCGATCTTTGAAAGATATTGAACAGTTTTACAACACAACAATTGATGAAATGCCCATGAATGTGGCTGATCTTATCTGAGTACTTAAGTTCAAAGGGCTGAGCTTAAGTACTGCAGCTTCAAACACTTatgttaaaacaaagaaaaattgcaaaagtatcAAATGACAAAAAAGTGATTGTTATCGGAGTTATCATACCAATTTCAGTGGTATGATGACAACAAATGCATGCACAAGATGTGCCATAAACTGAAATGTATTGGTTTACaacagaaattgaaaatgtcTTTTTGTCAATGTATCCCTAGCATAGTGCAGGTGCTgaaccaaaagaaaaagacaattcTAGTTTTAATAAAATACAGAACTTATATTTAAAGAGTTAGCTTGCTTGAGGTTTTGCATGTGCCTTTTCTGTTGTATTGTGTTTGTTACCAGCCTTGTATATGAACTCTTTTTGCTCTGAGAATTTAAAGTAGAGTAAAGGCAAGAGTTGATGTTATGCTGTCATTCTCTCCTAGCCAATAAAACATTGttcttaccttgattgaaagtCCTTGGTTTTTGTTATTTGGCCATACCAACAATATACCTTTAAATTTCTAAACAGGAGAAACACTGTTATATGAGGGGAGCATCTTTTAATCCTACagggaaaaaggaaaataaacaagAGATCTCACAGTATTTCGATAGAGGGTGCTGAAacgtaaaagaaagaaaaaaacacaacttCATGCCAGGCCGGAAAGCTTGTACAAAAACTACCAAATGTGACATGGAGGAAGCTAAACTATATGGAGAAACTACTCACTACTCGCTGCATCACactgaaattaaattaatatcTTATCTTGAGCTGATAATCGTGTTTTGCAATATTATTTTAGTATCATTACTTTATTGAAGTGTCAAGCTTATGCTGTCAGAAGAC

Protein

Uniprot

Uniprot term	Description
Q3SZ65	Eukaryotic initiation factor 4A-II OS=Bos taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Q14240	Eukaryotic initiation factor 4A-II OS=Homo sapiens OX=9606 GN=EIF4A2 PE=1 SV=2
P10630	Eukaryotic initiation factor 4A-II OS=Mus musculus OX=10090 GN=Eif4a2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR044728	Domain	ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03257	EIF4A; translation initiation factor 4A	-	Exosome	ko04147	deepkoala