Genomic Location: chr7:7196862...7204410
NR annotation: XP_029211477.1, 33 kDa inner dynein arm light chain, axonemal-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families
| CDS |
| ENSKKQT00000046520 |
| Transcript |
| ENSKKQT00000046520 |
| Protein |
| ENSKKQP00000040135.1 |
| UniProt accession | Description |
|---|---|
| Q26630 | 33 kDa inner dynein arm light chain, axonemal OS=Strongylocentrotus purpuratus OX=7668 PE=1 SV=1 |
| O14645 | Axonemal dynein light intermediate polypeptide 1 OS=Homo sapiens OX=9606 GN=DNALI1 PE=1 SV=2 |
| Q4R3K5 | Axonemal dynein light intermediate polypeptide 1 OS=Macaca fascicularis OX=9541 GN=DNALI1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005665 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10211 all species → | Ax_dynein_light | Axonemal dynein light chain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019347 all species → | Family | Axonemal dynein light chain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13183 all species → | AXONEMAL INNER ARM DYNEIN LIGHT CHAIN 28 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005930 all species → | Cellular Component | axoneme | Interproscan |
| GO:0030175 all species → | Cellular Component | filopodium | Interproscan |
| GO:0045504 all species → | Molecular Function | dynein heavy chain binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10410 | DNALI; dynein axonemal light intermediate chain 1 | - | Cytoskeleton proteins | ko04812 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora austera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora austera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
