Gene detail

Detailed information of ENSKKQP00000041222.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029198804.2, long-chain-fatty-acid--CoA ligase 1-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000047935

CTAGCAATTCTTTGTTTCCCCTGACGTTGCGGTAGCTATTCTTGTGTCTTGGAACAAAAGAGTTTGATTCAATGCTAATTTAACAGGGaagaaatgattttcttttgtttggcaCGCAAAAATGGCCATCTCATCACTTGAGTGAAAGCAAGAGATAGCCCAACATCAGAGCCACACCAATTGTGAATACGGGTGAAGATGGAGCCAGAATGAATTCCTTAACGACTGAGCTTGTTGAGACGCTCTTCGATGACGTTACCACAGTTCATGAAGTTTTTATGAGAGGAGTGAGGTTATCAGGAAATAAGCCTTGCTTGGGTTATCGCAGCAGTCCAGGAGGTCCTTATGTATGGCTCACTTATAATGAGGTCCTTGAGAGATCCATAGACACTGGCTCTGGTTTAATTGAGATTGGTTGCTGTCCGGTTGACGATGGACACACTTTTGTTGGAGTTTATGCGCCAAACAAAATTGAGTGGGTCCTTGTTGAACAAGCATGCAACCTGTACTCTCTATCAATTGTTCCATTGTATGATACCCTTGGTCCAGATGCCTGTGCCTATATTATCAATCAAGCTCGGATGACCACAGTAGCTTGTGACGAGAGCAAACTCAAAATTCTTTTGGAGCAGTGCAGCAAATGCCCCACACTGAAAAATGTTGTGAAGATTGGTGCAAAAGTAACTGATGAAGAGAAAGCTGCAGGAGATGAAAGTGGAGTGAAAATCATTGCTTTTGCAGAGTTAGAGGAGTTGGGAAAGAATCACAGACATGAAAAGAAGCCACCAAAACCTGATGATATTGCAGTAATCTGCTATACAAGTGGGACAACAGGAAACCCTAAAGGCGTAATGACAACTCACAGAAATGTAACAGCAACCTTGGCTAGTCTCGTTTTCATTGTTGAAAAGTGTGGAATTACTTACACCGATGCAGAGGTCCATTTGTCGTATCTCCCTTTGGCTCACATGTATGAGAGACTCGCTCAGCTGATGATGTTTCTTTATGGTGGTCGAGTTGGGTTCTTTGGTGGAAATGCTAGAAATATCCTGGATGACTTAAAAGAGCTGaaGCCAACTGTCTTCATCTCGGTTCCTCGAGTTTTGAACCGGGTGTACGATAGGGTTCTGAAACAGGTTTCGACCAGTCCAGTAAAGAGTTTTCTGTTCAACATGGCGATGCGGTACAAGAAAGCTGAACTGCAGAGGAACATTGTGCGAAATAACAGCATCTGGGACTATCTCGTGTTTAGAAAAATTCAGAATTCTATGGGAGGTAGAGTTCGTGTCCTCATCTCCGGTACTGCGCCTCTCAGGGATGATGTTATGGTTTTCCTTCGCTGTGCTCTTGGCTGCCACGTGTTTGAAGGCTACGGTCAAACCGAGACAACAATTGGTTCTTCTTTGCAGCTAATTGGAGATCAAACTTACGGTCACGTGGGTCCACCTATGCCTTGCAACAAAATCAAGCTTGTAGATGTTCCTGATATGGATTACTACGCTAAAGATGGCAAAGGCGAGATTTGCTTTTACGGGCCGAATGTGTGCAAGGGATACCTATATGACGAGAAGAAGACGAAAGAGGCCATCGACGAAGATGGCTGGCTGCATTCAGGGGACATTGGAGAATGGCTTCCGAGTGGAACGCTGAAGATTATCGATcgcaaaaaaaacctttttaaaCTGTCCCAGGGCGAATACATTGCGCCAGAGAAGGTGGAAACTATTTACTCTCAGTGTCCCCTGGTTCAACAAATTTTTGTCTACGGAGACAGCAGAAAGTCCAATCTGGTAGCTGTTGTTGTCCCCGAAACAGATAACGTCAAAAGATGGGCGGAAGAGAATTCTGTACAGGGAGACATCACTTCTTGGTGCAACGATGAGgagGTGAAAAAGGcaatttttgatcaaatgaCCGCAGAAGGCAAAAAAGAACGGCTCCGATCTTTTGAACAGGTGCGAGCAATTTCCTTAACTCCAGAAGTGTGGACGGTAGAAAACAATTTACTGACACCTACGCTGAAGCTCAAGAGACAGGCCTTGAAGAAACTCTTCGAAAAAACATTCGAAGAACTGTACAGTGCATTGACAGAATAAGTCGCTTGTTTCTGGGCAACTTAATCATTCTTATGGAACTCCAGGCTTGAACGGGACTTTAGTTTTTGTATTTGGTTAAAGTTTTCTCTTGGGTACAACGGTCTGTTGCTCGAAAGAACAGTTTTAAGTTTCAAACCTCTGTTATTTGGTCTGCTATATCGATTTATTTTCGTTAATTTGCTCAGTGACGTGGCCTTTGAGTGAAGATGAGTCTGAAGTTGATTGGCGTAAGCATGGCAGCCCCAGCATCTCTTCCAATCAAAAACCGAGTTTAGGCGGTTTATATTATTTGTTCTGTGTTGGTATTGTATTTACAATTTGAAAGGGTTAGCACTcaatgaaacttgaaaaatgaaatttttgcatTTACACAGGGAATATATAAGCACTTTTTGTCATGAATTTAATGGTTCAGTGCGTGAGGCTTTGGTGAATTAACGAAACGCACACTGCGACGAGAAACATCACAAACAAACCCAtagtttaaagttatttacgtgggcccagttcctcaaagcccgattaagctaaccgtggattagtggaaaaatttaattgctatttctttaccactaaagaagggattgcaacaaaattgtggcccaaaaaggttattaattataaattacttttccttaaaccttaatgttgtgaaaaatccttctttaacggtaaataaatagcaattaaatttttccagtaatccagggttagcttaatcggagTTTGAGGAATTGGGCCTTGGAGTCTTTTATGCTTCAACATTTATCATCACAAGTGACCATTaattacaaaatttgaaaattaatattcatcAGAAGTGACCATTaattacaaaatttgaaaattaatatACAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JID6	Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus OX=10141 GN=ACSL1 PE=2 SV=1
P41216	Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus OX=10090 GN=Acsl1 PE=1 SV=2
P33124	Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus OX=10116 GN=Acsl6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000650 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR045311 all species →	Family	Long-chain fatty acid CoA synthetase, eukaryotic	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43272 all species →	LONG-CHAIN-FATTY-ACID--COA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001676 all species →	Biological Process	long-chain fatty acid metabolic process	Interproscan
GO:0004467 all species →	Molecular Function	long-chain fatty acid-CoA ligase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01897	ACSL, fadD; long-chain acyl-CoA synthetase	EC:6.2.1.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.