Gene detail

Detailed information of ENSKKQP00000041853.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_015750988.1, PREDICTED: polycomb complex protein BMI-1-A-like [Acropora digitifera]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000048654

CCTTGTCTCATTAGAAGATCTTCTCAATTATAATTTCTCCTCTAGCGTTTTGCAGCAGGACTCTCAACATCTATCAGAACAGAGCAGTGTCCTCCTTTGTTGTTTTCAAGTTGAATGGCATGTCACGTGACCTTGTAATCAATACAACGCTTCGCTCTGTGTCCTCTACGAGATTGAATCGTGAATTAGCTCGCACAAAACTCCAAGGATAAAGCTTCGCTGATCAAAGACCACTCAAGATGTCTCTGCGTACGATGCAGCTGAATGATCTCAACCCACACATCCTGTGTGTTCTATGCGGTGGATACCTTGTAGACGCCACAACCATCGTTGAATGCCTTCACTCGTTTTGCCGCAGCTGTATCGTAAAGTATCTCCAAACTTCATACAACTGTCCTGTTTGTGATGTTGAAGTTCACAAGACAAAGCCCTTGTTGCACATTAGACCAGACAGAACACTGCAAGATATTGTGTTCAAGATTGTACCTGGTATATATCATGaaGAGGTAAACCGCCGCAAAGAGTTTGATGCCAATCGAAAGGAAGAATGCGAACAAGCTCCAGAGGACTCCGCTTCAACTGGCCATAAAAACGAGAAGGGGAAGGAAATTCTACCATTTGATGACCCAGTGTGTATAACCCTGGAATATTTTAGGAAAACAAGGAACCGCATGGAAAAAGAGATATTTCCGACTCGCTACCTTCGTTGCTCCGCACTGGTGACTGTTTGTGTGCTGAAGAAATTCCTGATCACGAAGTTTGCCATCCCGGAGACACACATTACCGAAATAATCCGCTCTGATGAAATACTTGATGGAAACCTGACAATGAAAGAAGTATGCAGAATATACGGTCTTTACTCGAAGCCATTTGTGGATCTTCAATACGTTTTCCTTGAGAAAAACGAAACAGCGACTCCTGTAGAAAAGCCAAAGATTGTGGAAGTAAAACGAAAGCGAATCAAGAAACGAAAAGAAGGCAGGAACTTGCTGAAAAAATGTCCTTCTGCCAGTGCATATTGTCAACACGGAAAAGGAGAAAGCAAGGAATCGAAGTTGCCGTCCTCTCAGAAGAGCGAAAGCGACCGTGACGCTGGAACGGCGCCCGTTCAAGCTCGGCTATTTGAAAAAGTACGAAAAGAAAATCAAGTGCCCAGTGACATGGAACGGTGTGCGGCCATGAACAGGGACGAATTGGTGTCTACTCAAATGCCCAGTGTCACTGAACATATTGGCAGTGTTTTCGAGGAGAATGACTTTTCACCTTGTACAAATATGTCGTGGGAGGCTACTGCCAATGAAAAAGAGGACACCTGCCCCAGGAACTTGGTCGCGAACAAAATTGAAAGTTCATTGATTACTACGCCTACGGTTAATGGTTTCAAGCATGCGCGTTCGTCCAACGCAGACAATGCCTCGAATGTTCTTAATCATGCCAAAGATATGTGTTTGAATCACATTCCTGGGGAATTCGAAGCTTCAGGGATACATCCAGGACTTCTCGTAGAAACGTCTTagcaattaaaaattgcaaagctTGTTGTCAATTGAGTTTATCGCGTGCCCAGGAGAGAAAGAGATTTTGGGTCAGAGATAGGGTAGATCGCTTGAGTGGATGACGTAGGAGTGTTCCTATTGCCTGAGAAGGCTCTTAAGCACTGCTACAAATGAGTTTATTTTAGAATACTCGTTCACAAAAATTTAGTTGCAAAGGTTGCAATAATCTGTGATAAAACCAATTTCCAAAACAACTACTGAAGCAGTCACTGAATTGATGTCAGGGTCACTTGTGACATGCGTGACATCCTGTTCATTTTCGCGTGTAAAGTGCATCTAAAAATAGATACTTGAGACTTTGCCGGGTCAAGACCATGGAATGATGGAGCAAAAATCTTGACTGATTAATCCTTGCTCTAGATagagaaaaaatatttcaaattcttGACACGACAACGATTCTTTTCTTCTAATGTGCAAGGAAAAGTCCGAGAGAAAACTCCACTGCAGCCGTGTCTGATCGCACCATAAATTTCAACGGGCGGTAAAACTTACCGCTATCAACTTTGGACCAATATGACTTATTTCACGACCCTAGACTCACTCACTTGATCAGCCGAGGTTTCTCCAAAAGCATCGAAAAGGTTTGCTAAAAAGTAAAGCCCCTCGGTTCTTCAAAGATAAATTTGGTCCACCCACATGGTTGTCAATTCTTTCTACTTTCAATCAACCAGCACTATGTGATATGCTGGTATCACGGTAAGTTGTCTCTATTTTCGACGAAAAATAAGcgagcgggcgaaatacacgcgtccCTCGAGAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JIR0	Polycomb complex protein BMI-1-A OS=Danio rerio OX=7955 GN=bmi1a PE=1 SV=2
P25916	Polycomb complex protein BMI-1 OS=Mus musculus OX=10090 GN=Bmi1 PE=1 SV=1
Q32KX7	Polycomb complex protein BMI-1 OS=Bos taurus OX=9913 GN=BMI1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000402 (this species only)
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR032443 all species →	Domain	RAWUL domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10825 all species →	RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan
GO:1990841 all species →	Molecular Function	promoter-specific chromatin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11459	PCGF4, BMI1; polycomb group RING finger protein 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.