Gene detail

Detailed information of ENSKKQP00000042507.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_044178814.1, N-chimaerin-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000049388

CTCGATCTCAACTTTTGTTGAAGAAAACCATTAGACCGAGTCTATTTAGTGGACACCTTGAAATGCGAGTTTATTCTggtcattttattttcttttgattaCACGTTATTCACTCCTTGGAGAGTGAGCAATGCCCAATTTCTCTAAGGTAGTCAACAAgacagattgcttgaaacaccaagatcactgaGTTTCATGGTTGTATATCTCGTGAAGAAGCAGATGAGCTTGTGTCAGAATCTGATGGATGTTATCTTGTGCGTGAAAGTCAGAGATCACCAGGAAGTTACACCCTGACAATGAGGTTTGGTGGAGTTTCAAAAAACTTTAGATTGTACTACGATGGTTTGCATTATGTTGgtgaaaaacgctttcaaacCATTCAAGATCTTGTCGCAGATGGCTTGATCACAATGTACATTGACACCTATGCAAAAGACTATGTTGACACAATGATGATTTCACCAGCAAAACCAGAAGAGAAGAAATCTGTGAGACAAAGtgaaaccaaagaaaatcaACCTGCAAAAGAAGTTATTGAACAAGCCGATTCTGGAGATCAACATCAGGAACACCGGTACAGTATTGGAAAAAGACCAAGCCTGAAGCCCTCAGcatataaaaaaaatcacaactTCAAGATGAACACTTTCAAAGGGCCACACTGGTGCGATTATTGTCGGAACTTCCTGTGGGGTCTGATCATGCAAGGGGTGAAGTGCCAGGACTGCGGATTTAATGCACACAAGCAATGCAGCACAAGTGGTCTCATACCTCCAGAGTGTAAACCGGATAGAAAATATGTAAAAAGAGTGTTTGGTGTTGACTTGACAACACTTGTAAAACTACATAATTGTAAAAGACCCTATGTTGTGGAAGCCTGTATCGCAGAAGTAGAAAAGAGAGGTTTAGATAGTGAGGGGATTTACAGAGTATCAGGGTTTTCAGATGACATTGAAGCATTGAAGGATTCCTTTGACAATGATAGTAACTCTGTCAACTTGTCTGCATATGATGACATAAACATTGTGTGTGGTGCTCTTAAGCAATATTTCCGTATGCTTCCCATCCCAGTTATTACCTTTGAGTTGTACAACAAGTTTATAGATGCAGCAAGGATAACTGACAAGCACAGGAAGGCAGAGGCACTCTCAGAAGCAATTGATGCCCTCCCGCATTCACATTTTGAAACACTTAAGTATCTCCTCGGGCATTTGTACAGAGTGGCGaggaggaaaaaagaaaacatgatgaGTGAACAGAACCTTTCAATTGTATTTGGGCCAACACTCATGCGATCTCCTGAAGGGGATTCTGTGGATATTCTCAGTGATATGAAAGCACAAAGACTTGTCATTGAAACTCTGATTTCTTGGCAAGATATTCTCTTTGAAAGTTCATGATGAATGCATCAGTGTTTGTGTTGTCATGGATTAATAATTCATGTCCTGATTTTTGTTCAAAGCCTAGGGTTATTAATGAGCCACAGATCCCAAAATGTTTGTTTTACACATTACGTTTTTTCATTGGAAACTGCAGGAAATCAATGGTAAATAGctataatatttttatttttttattatttttttgaacaTACAAATGCACATTGCAATCATTTTTTTGGTGTTAGTAGCTTTCAACAACTCTAAggccatcttggatttgttttatgcaaaatgtttttCAACACAGGAAACTGCATTAACCTCTGATGTTAATGGAAGTGCTTAAAGGACAGTCATGAAATAATTGGTTTAGCCATCAAATCTTTGGGTCTGCAAGTTTGCTTTaattttgcagcaattttttcTGTCTTCTGCTTAGCAGCAAGTTAAAACATAAAATCATTTTTGTGGGATTGTGAGCTCATTATTGATCATGTTTAAAGCAGTTTCATTCCTTATTATAAAGTGGCAGCGACTATTTTTTGGTGTGTTAAACATCAGTATCTAaaagattttaaataataataattattagaaagtGGAAATACAaacttaaagaatttatttGGATTTACATTGGTGGAGCCACTGTTGTTGTGGCAAACCCTGTTCATGCATCACTTAAAATTCCGATACAGTCTCAAAAACAACTACCACTCTTTTTCGGTGTTGTACCTTAAAAAATGATGTTAGTCACAAAAGCATGACAAGTTAACTTTGGAGTTGTACGATTAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15882	N-chimaerin OS=Homo sapiens OX=9606 GN=CHN1 PE=1 SV=3
Q91V57	N-chimaerin OS=Mus musculus OX=10090 GN=Chn1 PE=1 SV=2
P52757	Beta-chimaerin OS=Homo sapiens OX=9606 GN=CHN2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004109 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR051854 all species →	Family	Rho-type GTPase-activating protein	Interproscan
IPR020454 all species →	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46075 all species →	CHIMERIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20630	CHN1_2, ARHGAP2_3; chimaerin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.