Gene detail

Detailed information of ENSKKQP00000042999.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: B8V7R6.1, RecName: Full=Collagen alpha chain [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000050007

ATgGGTCCTGTCGGAGCAACGGGTCCAGCAGGACAAGCTGGTGCTCCTGGAAGTGCGggtGTGCCTGGAGCTCAAGGACAGTCTGGTGCTCCTGGAGACAGGGGTCGACCTGGAATGACTGGGTTACAGGGATCAAAAGGAGAGAAAGGTGGACAgGGCCCAGTGGGAAATCAGGGACCAAGGGGATCTACAGGCTCAAGTGGAAAACGGGGGATGTCTGGCTCAATGGGACCCCCTGGACCTGCTGGCCCTGTTGGACCCCCAGGTTCTGCTGGTCGCCGTGGGCCTCCAGGGACTGATGGAAATCCTGGCCGCAAGGGAGCTACAGGACCTCCTGGAGAGAACGGACGAAATGGACTCAAGGGTGACAAGGGAGGTGCTGGTCTCCGCGGTCAACCTGGGCAACCTGGCGCTAAGgGACCTTCTGGACAACCAGGAGTGGTAGGACGAGATGGCAAAACTGGTGTCCCGGGAGACCCAGGCATTGATGGAAAACCAGGATCTCCTGGTCCTCAGGGAGCTCCTGGAGCACCTGGTCCAGATGGATTAACAGGAACCAAGGGATCGATGGGTGAATCTGGTATTGATGGAGAACCTGGACCACCAGGACCTCAAGGAGCAAAGGGTGAAACTGGATTGGCAGGAAGGCGTGGACTTACTGGAATACCAGGAAAGCAGGGACGCCAAGGTGAAAGAGGAGAACAAGGAACTGCAGGATCTCAAGGACAGCAGGGACAACCAGGAACACAGGGTCCTCCTGGCTTGCCAGGAAAACAAGGAGAGACTGGAGAACCTGGAGAAAGTGGAGAAGATGGCACGCCTGGTCCCCGGGGAGAACGAGGTGCTCAAGGTGAACGTGGAGCCACAGGAATGATGGGTCCCTCAGGAGACCCAGGAGAAGCTGGTATCCCTGGTGCTGACGGCAAAGCAggTGAACGAGGTGTCCCTGGTGCACCAGGCCCTGTTGGAACCCCTGGTCTTCCTggTTTGCCTGGACAACAAGGAGCAATGGGACCTATTGGTGCCAAGGGGTCCAAGGGAGATGTAGGTCCTACCGGTGAGAGAGGATTCGATGGCAAAGATGGAGAACCAGGACGAGATGGCAGCCCTGGTCCAGTTGGTCAGCCTGGGGTCCCTGGAGAAAAGGGTGAAGATGGTATTCATGGAACAGATGGGACTCCTGGAAGTCGTGGTGATACGggCCCTCGTGGTTTGCCTGGAAACCCAGGTCCTCCTGGCAGACCGGGTGCATTGGGAGCCAGTGGCCCACCAGGACCCCAAGGACCACGTGGACCGCGCGGAGAGTCGGGTATGAAAGGACCAGCTGGGCCTCCAGGAAGACCAGGGGCTACAGGGGCTCTGGGTCAATTGGGTAGGACAGGAATAAAGGGTGAACCAGGAAATCAAGGTCGACGGGGACCACCTGGTCTGCAAGGAGATCCTGGAAGCCCTGGACAAGCCGGACCCCCTGGACCTCCAGGTCCATCGGGACCTTCGGGACGAGACGGGTCAGATGGACAGAAGGGTTCCACAGGAGAACCAGGCCGACCCGGAAAAGATGGGATCCCTGGACAACCCGGCTCAAATGGAAAAGACGGAGAACCAGGGACCCCTGGATCAGACGGAAGAGCGGGAGAGATTGGCCCAACAGGACCTGTCGGACCCAAAGGAGAACTAGGAGCTCCGggCGCCACCGGGCCCATGGGTAACTCTGGTCCATCAGGAACACAAGGAACAAAGgGAGAAAAAGGTCCACCAGGAGCAAACGGACGAAATGGATCACCGGGACTTTCTGGATCGCGGGGTGCGCAAGGGCCCCAAGGGGCTGCCGGAACTCCCGGAGAAAATGGCCTCGATGGTGGAACTGGAGAGAATGGTACTAATGGACGTCCAGGTCTTAAGGGAGAAATCGGCTCACCCGGAGATCCAGGTTCGTCTGGAAGCCCCGGACCGGTCGGCCCACCGGGACCTAAGGGAGATACCGGACCACCGGGTATACAGGGAGAGAAAGGAAGACGTGGGGCGGATGGCATTCCAGGAAAAACCGGAGAACCAGGCCCTCAGGGTGACCAAGGACCTAAAGGACAGAAGGGTGAAGTGGGACCTGTTGGTGAAAAAGGAGACAAGGGTTGGACTGGAACACCGGGAGATACTGGACCCCAGGGTGACCGGGGTGAACCGGGTCCCCCTGGAAGAGATGGTGTTGACGGGCCTCCAGGACCGAGGGGTGCTCCTGGTGAGATGGGTGGCATAGGAGATCCAGGGTTGAATGGCTCGATGGGTGAACCTGGAAACAAAGGGCCCGATGGTGATCTGGGTGAGCCTGGTCTTAAGGGCCCTGATGGTATCAAAgGACCCCCTGGTCCTCCTGGCCCCCCGGGACCTCCAGGGCAGCCCGGTATGTCGGAGATCGCTAGCTACTTGTCGGTAGGAAATCTCGAGAAAGGCCCCGGATTCCGACTATACTCCAGCAGTGGCGAgGAAATGCCCAAGCAAAAAATTAAGGCGGAGAACGTTCTAAAAGACTTGGACGAAAAGGACAGGGAAATGGACTCCCTAATTGCTCCCGATGGCTCAAGAAAGTTCCCTGCTAAAACTTGTTACGACCTGTTCCTTGATCACGGAAATTTCGAGAGTGGTGAATACTGGATCGACCCCAATGGTGGAACGGTTAAGGATGCTATCAAGGTGTACTGTGACAAAAAGAAGAATTCGTCCTGTGTCTACCCGACAAATCCAAAGATCTCCGACCTTGTGTTGAAATCTGGGTTCGAAAGTAAAAAAGACAAATGGCTGAGCAAAGCGTTTAAGAAGAGCGAGGAGGTTGAGTACGATGCTCATTATACACAAATCAACTTCCTGAGGACTCTGAGCAACTACGCGAACCAAAATGTGACTTATGCCTGTCGAAACTCCAAAGCGTGGGAAGATGGCCAACACTCCATCAAACTGATGGGCTCCAATGATATGGAATATCATGCTTCTTCCAAGATTTCCCTCAGACCTACCGTCATCATGAACGAATGCGCTGAGGGTGGCAAATTGGACAAATGGGGCAAAACTGTTTTGGAGATCGACACCCGAGAGAGAAGTCGGCTACCGATCGTTGATGTGTCGGCATTTGACGTCGGACGAGAAGGTCAAGATTTTAAACTTGAGATTGGACCGGCCTGTTTCCATCATATCAAGTACTGA

Transcript

ENSKKQT00000050007

CTTGCATCTTTCTTGTTTGTAGGGTTCCAGAGGACAAAGTGGTTTGAGGGGTTCTCCTGGTACCCCTGGGGCTAAGGGTGATCGTGGTGAACCAGGTGGGCAAGGTGACCAAGGGGAGACGGGGGAACAGGGACAGCCTGGAGAGCAAGGACCCAAAGGTGATAATGGAAGAAATGGCAACCCGGGAAGAAGTGGAGCTTCTGGAGCCAAAGGAAACATgGGTCCTGTCGGAGCAACGGGTCCAGCAGGACAAGCTGGTGCTCCTGGAAGTGCGggtGTGCCTGGAGCTCAAGGACAGTCTGGTGCTCCTGGAGACAGGGGTCGACCTGGAATGACTGGGTTACAGGGATCAAAAGGAGAGAAAGGTGGACAgGGCCCAGTGGGAAATCAGGGACCAAGGGGATCTACAGGCTCAAGTGGAAAACGGGGGATGTCTGGCTCAATGGGACCCCCTGGACCTGCTGGCCCTGTTGGACCCCCAGGTTCTGCTGGTCGCCGTGGGCCTCCAGGGACTGATGGAAATCCTGGCCGCAAGGGAGCTACAGGACCTCCTGGAGAGAACGGACGAAATGGACTCAAGGGTGACAAGGGAGGTGCTGGTCTCCGCGGTCAACCTGGGCAACCTGGCGCTAAGgGACCTTCTGGACAACCAGGAGTGGTAGGACGAGATGGCAAAACTGGTGTCCCGGGAGACCCAGGCATTGATGGAAAACCAGGATCTCCTGGTCCTCAGGGAGCTCCTGGAGCACCTGGTCCAGATGGATTAACAGGAACCAAGGGATCGATGGGTGAATCTGGTATTGATGGAGAACCTGGACCACCAGGACCTCAAGGAGCAAAGGGTGAAACTGGATTGGCAGGAAGGCGTGGACTTACTGGAATACCAGGAAAGCAGGGACGCCAAGGTGAAAGAGGAGAACAAGGAACTGCAGGATCTCAAGGACAGCAGGGACAACCAGGAACACAGGGTCCTCCTGGCTTGCCAGGAAAACAAGGAGAGACTGGAGAACCTGGAGAAAGTGGAGAAGATGGCACGCCTGGTCCCCGGGGAGAACGAGGTGCTCAAGGTGAACGTGGAGCCACAGGAATGATGGGTCCCTCAGGAGACCCAGGAGAAGCTGGTATCCCTGGTGCTGACGGCAAAGCAggTGAACGAGGTGTCCCTGGTGCACCAGGCCCTGTTGGAACCCCTGGTCTTCCTggTTTGCCTGGACAACAAGGAGCAATGGGACCTATTGGTGCCAAGGGGTCCAAGGGAGATGTAGGTCCTACCGGTGAGAGAGGATTCGATGGCAAAGATGGAGAACCAGGACGAGATGGCAGCCCTGGTCCAGTTGGTCAGCCTGGGGTCCCTGGAGAAAAGGGTGAAGATGGTATTCATGGAACAGATGGGACTCCTGGAAGTCGTGGTGATACGggCCCTCGTGGTTTGCCTGGAAACCCAGGTCCTCCTGGCAGACCGGGTGCATTGGGAGCCAGTGGCCCACCAGGACCCCAAGGACCACGTGGACCGCGCGGAGAGTCGGGTATGAAAGGACCAGCTGGGCCTCCAGGAAGACCAGGGGCTACAGGGGCTCTGGGTCAATTGGGTAGGACAGGAATAAAGGGTGAACCAGGAAATCAAGGTCGACGGGGACCACCTGGTCTGCAAGGAGATCCTGGAAGCCCTGGACAAGCCGGACCCCCTGGACCTCCAGGTCCATCGGGACCTTCGGGACGAGACGGGTCAGATGGACAGAAGGGTTCCACAGGAGAACCAGGCCGACCCGGAAAAGATGGGATCCCTGGACAACCCGGCTCAAATGGAAAAGACGGAGAACCAGGGACCCCTGGATCAGACGGAAGAGCGGGAGAGATTGGCCCAACAGGACCTGTCGGACCCAAAGGAGAACTAGGAGCTCCGggCGCCACCGGGCCCATGGGTAACTCTGGTCCATCAGGAACACAAGGAACAAAGgGAGAAAAAGGTCCACCAGGAGCAAACGGACGAAATGGATCACCGGGACTTTCTGGATCGCGGGGTGCGCAAGGGCCCCAAGGGGCTGCCGGAACTCCCGGAGAAAATGGCCTCGATGGTGGAACTGGAGAGAATGGTACTAATGGACGTCCAGGTCTTAAGGGAGAAATCGGCTCACCCGGAGATCCAGGTTCGTCTGGAAGCCCCGGACCGGTCGGCCCACCGGGACCTAAGGGAGATACCGGACCACCGGGTATACAGGGAGAGAAAGGAAGACGTGGGGCGGATGGCATTCCAGGAAAAACCGGAGAACCAGGCCCTCAGGGTGACCAAGGACCTAAAGGACAGAAGGGTGAAGTGGGACCTGTTGGTGAAAAAGGAGACAAGGGTTGGACTGGAACACCGGGAGATACTGGACCCCAGGGTGACCGGGGTGAACCGGGTCCCCCTGGAAGAGATGGTGTTGACGGGCCTCCAGGACCGAGGGGTGCTCCTGGTGAGATGGGTGGCATAGGAGATCCAGGGTTGAATGGCTCGATGGGTGAACCTGGAAACAAAGGGCCCGATGGTGATCTGGGTGAGCCTGGTCTTAAGGGCCCTGATGGTATCAAAgGACCCCCTGGTCCTCCTGGCCCCCCGGGACCTCCAGGGCAGCCCGGTATGTCGGAGATCGCTAGCTACTTGTCGGTAGGAAATCTCGAGAAAGGCCCCGGATTCCGACTATACTCCAGCAGTGGCGAgGAAATGCCCAAGCAAAAAATTAAGGCGGAGAACGTTCTAAAAGACTTGGACGAAAAGGACAGGGAAATGGACTCCCTAATTGCTCCCGATGGCTCAAGAAAGTTCCCTGCTAAAACTTGTTACGACCTGTTCCTTGATCACGGAAATTTCGAGAGTGGTGAATACTGGATCGACCCCAATGGTGGAACGGTTAAGGATGCTATCAAGGTGTACTGTGACAAAAAGAAGAATTCGTCCTGTGTCTACCCGACAAATCCAAAGATCTCCGACCTTGTGTTGAAATCTGGGTTCGAAAGTAAAAAAGACAAATGGCTGAGCAAAGCGTTTAAGAAGAGCGAGGAGGTTGAGTACGATGCTCATTATACACAAATCAACTTCCTGAGGACTCTGAGCAACTACGCGAACCAAAATGTGACTTATGCCTGTCGAAACTCCAAAGCGTGGGAAGATGGCCAACACTCCATCAAACTGATGGGCTCCAATGATATGGAATATCATGCTTCTTCCAAGATTTCCCTCAGACCTACCGTCATCATGAACGAATGCGCTGAGGGTGGCAAATTGGACAAATGGGGCAAAACTGTTTTGGAGATCGACACCCGAGAGAGAAGTCGGCTACCGATCGTTGATGTGTCGGCATTTGACGTCGGACGAGAAGGTCAAGATTTTAAACTTGAGATTGGACCGGCCTGTTTCCATCATATCAAGTACTGAAAGAAGTACACTCTTTACAACCTAGCTTTCCTGGAGTCTTAGGCGCATTGTCAATTGTATATTAATATAAGTTGTTTATCAATTACGACAATGGCAATCTATCACTGCTTCTTTAGAAAATATAGTTAGCTCAACTTGGTTTTCAAATAGCCGTTTTGGCGAAATTATTGCCTTTAAAAGTTCAATAAAAGTTTGCTATTTTCGAGCTTTTCAgcgttcttttttttctgtggcTTTTTCTATATCTGCATTTATCGTATTTTATTGTTAACGTTTAtaattggttttattttttagtttaatTGGTAACAACGTAGAAAACTGTTTCTTTGTGTACGGTGAAACAGACTTAGTGCGAATTTATATCGAGACAAGAGGGAGAcgagaggagctttgccatttaTTTTAGTCGCAGATTGTCACGTTAAAGGAATAAAACAAGAAGCTGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8V7R6	Collagen alpha chain (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
O93484	Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN=col1a2 PE=2 SV=2
P02457	Collagen alpha-1(I) chain OS=Gallus gallus OX=9031 GN=COL1A1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410 all species →	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885 all species →	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000042999.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.