Gene detail

Detailed information of ENSKKQP00000043897.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029196062.2, tRNA wybutosine-synthesizing protein 4-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSKKQT00000051174

GTTCAAGGGACGAATGACCATGCTACACTCAGCAAACTTTCCACTGTTAGAATGGGTTACTTTGAAGACAGGTTTCTGCCATATTTTGTATCCAAGAGGTCCAGAAGAGCACCAGTCATATTACATAAGGACAAAGGCAATTCATTTTGTGGTAAAAGGATTTCTATAGTTTCCCTTGGAGCGGGATATGACACGCTTTTCTTTTCCCTTGCCAATCAAGGACTCTTGAAAGAAACCAAATATTTTGAGGTTGATTTTCCAGAAGTTGTTCAAAAGAAgacaaatttaattttaaaaaaccaAGAATTGGCTCGAGTGCTTGGAACAGTCCATTCCCAGAATGAGCATTGGCTCGGAGGAGGAATTAACAGTGAAAAGTATTCTTTGTTGGGCTGCAACTTGAAGAACTCTTCCGCATTGGAGAGGTGTCTTTTGAAATGCGGTTTGAACACCTCATCTGTCACACTTTTGTTATCTGAAGTGGTACTTACATACCTTAATCCACCTAAAAGTGCCACAGACATTATTGGATGGGCAGCACTTTTCTTCACATCTGCAATGTTTGTCATGTTTGAGCAGGTTCATCCAAGTGACTCGTTTGGAATTAAGATGATGAATCATTTTCAACATACAGTGGGCGCACCTCTCTATGGCACGGAAGCTTTCCCCACCCAGCAAAGTCAAATTCAACGTTTTATGAAAGAGgGCTGGCCTCTTGTTAACTGTCCAACATTAGACTTCATTTACTACGAGACACTCTCGATTGAAGAAAAAGCTCGCGTTGAAGGAATTGAACCTTTCGATGAATTTGAGAGAAATTCtatatctccgcgcgcccatgtattattctctatgtaTTTAATTGGAAACAGTTTTTCCCATGGAAGAATCCTAGTTATTTCTTTATTCTTATATTCGGTAGAAAAGAAGCAGTTAACCGATCAGCCGCGTCTTGTTGATAATAAGCAGTGTATTATTCATCCCTTGAGTGTTTTACCTTCATCGGATGGAGTAAAAAGGTTTGGACACACAGCCACTTCTTTGTCGGCTGACATGGTTCTTCTTGTTGGAGGGTTTGGCCTTCACAATAAAAAACACACTCGACTGGATGGAGCACAGCTGTTACACTTTGTACAAGGTAAAAACAGtTGGCATTGTGTGGACATCACAACAACTTCGGACATTGCACTTGGCAGCCGGATGTTTCACACTGCAACCAGACTAAGTAATGAAGATGTCTTTATTTACGGTGGCCGAACGTCGCCATCCAAGCCTTGCGAAGAAGCTATTTCACTATCTTTAACGACAACAAACGGTTTTATTTCTGAGAAGAGTTATACGCATTCTGTTGTACGTTGTCATGGAGACATTCCTGAGCCAAGATGGCGGCACACCGCGTCGTGTGTTGTCCTTCCTGATGGTAGTGAGAATATATTAGTGTTTGGAGGTCGCAGTTCTACCCAAGTCGCAATGGGGGATTGTTACTTGCTTCATATCAAGTCACAAACATGGCGAAAGGTGTTCTTCGGTGGAGATACCGCTGTGCCGCGCCATTCCCATACTGCGTGCGTCTGGAAGGACAAAGTAATACTAGCGGGGGGTCTGGATGCTAATCTTCTTGCACTGAACATCATCCAGATATTAGACACTCAGGTTAGTCCAATGATGTTGCAAACGTTGAACATTGATCCACCGTTGATGCCAAGATACTCTCATACAGCACATGTGGTAGATGACAAACTTATACTTGTCGGCGGAGTCACGACCAATTCATCACATTCTCCTGGAATAGTGATTCTTAATCTTGAGTCACTGACGTGGAACTCGTTTACTCTGCCGGCCTTGTCAGCTCCCAATACACCGTTGATGCTTCACAATCATGGCAGTGTCTACTGGGAAGATGCGCAAGGTATTATGGTCCTTGGTGGTGGAGGGAATTGTTTTTCATTCGGGACTCATTTTAATGAGGGACCAATTATGATCAAACTTCTGCAGAACTGA

Transcript

ENSKKQT00000051174

Protein

Uniprot

Uniprot term	Description
O60294	tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens OX=9606 GN=LCMT2 PE=1 SV=3
Q5XIA3	tRNA wybutosine-synthesizing protein 4 OS=Rattus norvegicus OX=10116 GN=Lcmt2 PE=2 SV=1
Q8BYR1	tRNA wybutosine-synthesizing protein 4 OS=Mus musculus OX=10090 GN=Lcmt2 PE=2 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04072	LCM	Leucine carboxyl methyltransferase	Family	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007213	Family	Methyltransferase Ppm1/Ppm2/Tcmp	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR037293	Homologous_superfamily	Galactose oxidase, central domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46529	TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008175	Molecular Function	tRNA methyltransferase activity	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan
GO:0031591	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan