Gene detail

Detailed information of ENSKKQP00000045159.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_044173590.1, regulator of telomere elongation helicase 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSKKQT00000052556

ATGGTTCAGGTACAAATTAGAGGAATAGATGTTAATTTCCCCTTCCAGCCCTATGGCTGTCAAGTGTCTTACATGGAAAAAGTTATCCAGTGTCTGCAAGAGGAGAAAAATGGAATTCTTGAGAGTCCAACTGGTACAGGAAAAACTCTGTGTTTACTGTGTGCAACATTGGCTTGGAGAGAAACCTATGTAGCTCAACTTCAGCTTCAACAAAGGCTTAGTTCTGACCAAAATGGATCCAATTATGTTCAGACACTTGGGGATGAGTTGAAAGAAGCTGCTTATGGACAATCATGGGGTGCTTCAAATGATGACAAAGCATCATTTTTTGAGGCTCCAAGAATTTTGTATGCATCAAGAACCCACTCACAGCTTTCACAAGCTGTCCAGGAACTTAAAAATACCATTTACAGACCAAAAGTCAGTATTATTGGATCTCGTGAACAACTCTGTGTTAACAATGATGTACTCAAACAGGAAACTAATTCTGCAAAGGTACATATGTGTAGAGCTAAAGTTCAGGCAAGAACATGTCACTTTTACAATAACTTGGAGGGTAACAAGGCTAACAAAGATTTTACTCAAGGAATCCTTGACATTGAAGATTTAGTGGAACTTGGAAAAAAACACAGGGCATGTCCATATTACATGGCCAGGGAACTGAAGACAGGAGCTGATATAATTTTTATGCCATACAATTATTTACTTGATGCCAAATCAAGGAAGGCCAATAGTCTGGACATATCAGGTAGCATTATACTGTTTGATGAAGCACATAATGTGGAAAAAACATGCGAAGAATCTGCATCCTTTGATTTAACATCATTTGACATTGCATCATGTATAGAAGACATAGCTCAGTGTATTGAATTAATTGAGTGTCGTGAGCAGAATGAATTGGCTGTTGAAGAAGGAGCagCTGATGTGGACATCAACAAGGAAGATCTTGCACACCTGAAATCACTTTTTATTGAGCTTGAGAAGTTAATTGATGGCATGGAACTGCCACAAAGTGGAGAAGGATTAACTAGACCTGGAAGTTTCATGTTTGAACTACTGTCAAAACTAAATATTAGTTACTCAACAAAAGATCAAGTCTTAGAGGTCTTGGAAAAGTGCAATTCTGTTCTGGTTGGAGATACcagaaaatttaaaggaaaacattttGCGCTGCAAAAGTTTTCTGATGCTTTGCAGgTTGTTTTCAGTAAGGATCCTTCAAATGCTCATGCAAGTACAGATTCATCCAAGTTATTTAAGGTTCACATTCAACTTGAGGCAGacagcaagaagaagaagaaaaatcttGATGTGTGGACTGCAGGCTCAAACATTTCCAAACAGGGTCGCACTTTAAGTTACTGGTGTTTCAGTCCAGGACATGCAATGAGAGAGCTTGTATCATATGGATTGCGTTCGGTTGTGCTGACAAGTGGAACTCTGTCACCTCTAAGTTCCTTCCGAGCTGAAATGCAAATTTCTTTTCCAGTTCAACTTGAAAATCCACATGTGATTGAACATCATCAGATGATGGTGGGTGTGGTCACTAAAGCACCAGATGGAGCTACTTTAAATTCGTCTTATGAAACAAGattCACTGTGGAATATATGACAGGATTAGGAAATGCTGTTGTTAATTATGCCCGGACTGTGCCTAATGGGATGTTGGTGTTCTTTCCCTCCTATCCCGTCATGAACAAGTGTCTAGAGCACTGGCAGAACAGTGGAACATGGTCAAGATTAGAACAACACAAACCCATTTTTGCTGAACCCAAAGGAAAAGGAGACTTTGTAGAGACCATGGAACGATTTTATGAAAAGATTAATGATCCAAACTACAATGCTGCAACATTTTTTGCTGTCTGTCGAGGAAAGGTCAGTGAGGGATTGGACTTTGCTGATATAAATGGTAGAGCTGTGGTAATAACAGGATTACCATTTCCACCAAAAATGGATCCAAAgGTTCGATTAAAAATGTCTTTCCTTGATGACAAcctccaaaaaaataaaagcttaAGCAAGGGATTAAGTGGCCGCCAGTGGTACCGTCAACAGGCTTCCAGGGCTGTCAATCAAGCAGTGGGGAGAGTCATTCGTCACAAGAATGATTTTGGTGCAATATTACTGTGTGATGTCCGTTTTACCTATCCTGATGCAATTCAACAGTTACCTCTTTGGATGCGACCTTATGTTAAAGTTTACAACGAGTTTGGTGCTGTTCAAAGAGATCTTATACATTTCTTTCGCACTGCTGACAAAATGGTTGATAAATCCTACATGAAAGTGAAGGCTCTGAAAAACCATTGCATTAAAACAGAAGTTGTTTCCTCATCTGTGATCTCCACTTCTACTGGTGAAAAGAAGTTCAATCCCCCAACAACAGACACGGGTGGACAGAGGACTAAACGGGCAGATATGACCATTGCAAGAGGGACAATCAACAAGTCATCCAcACCAGTTTCACCTCTTCGCCTCAAGTATGAATACAAATCCGGTGTTTTACATGAATCTGCTAACACAGTGAAGCAAGCCAGTTTGATCGATTCTTTAACTAATTCAGAGGTACAATTTCTTTGCTTTCCTACAAATTTTTGTGAAGATATTTCGTTCATGTGTTTTGCATGGCTATCGTTACTCCAACAGTCATTGTTATTATCTCAGGACAAGTTGCCACAAACGCTTCCACCTTCAAAGGCGGAGAAATTCAATAAAGCCAAGGAGTATATTCTTAAGGTGAGCTGTGCAGGGTGCTTAATCATTTTTCCTGTTACACTCGTTGTGAAACAAACCTTAAGTGATAATCATTACAGAACTTTCTCTCAAGTCTTGGCGGAGTATAAACAAAATCGTAATTTGGACTCCCTTATCGAAGGTCTTAGACCTCTGTTTACAAGGACGGAAGATCGATATCCTTTATTTCTTGGCTTCTCCAGTTACATCCGGGACCCGGCGgacaaaaaaaggttttttgaAGCGTACACTGACCTTACAAACTCAGatGTCCCTGCAGAATTCATGGCAGGCCTCAAAATACGAAAAAGGGAAGATTCGAGGTTCGAAATTGGTAAGACAAGCTTAGTTGACATTTTATCACGCGGGTTCTGA

Transcript

ENSKKQT00000052556

Protein

Uniprot

Uniprot term	Description
Q5RJZ1	Regulator of telomere elongation helicase 1 OS=Rattus norvegicus OX=10116 GN=Rtel1 PE=2 SV=2
Q9NZ71	Regulator of telomere elongation helicase 1 OS=Homo sapiens OX=9606 GN=RTEL1 PE=1 SV=2
Q0VGM9	Regulator of telomere elongation helicase 1 OS=Mus musculus OX=10090 GN=Rtel1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06733	DEAD_2	DEAD_2	Family	Interproscan
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010614	Domain	RAD3-like helicase, DEAD	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030845	Family	Regulator of telomere elongation helicase 1	Interproscan
IPR014013	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan
IPR013020	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR006554	Domain	Helicase-like, DEXD box c2 type	Interproscan
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0010569	Biological Process	regulation of double-strand break repair via homologous recombination	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0045910	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0070182	Molecular Function	DNA polymerase binding	Interproscan
GO:0090657	Biological Process	telomeric loop disassembly	Interproscan
GO:1904430	Biological Process	negative regulation of t-circle formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11136	RTEL1; regulator of telomere elongation helicase 1	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala