Genomic Location: chr9:27088207...27096745
NR annotation: XP_029194323.1, translation initiation factor eIF-2B subunit alpha-like isoform X2 [Acropora millepora]
Species Acropora austera · all data for this species · gene families
| CDS |
| ENSKKQT00000052587 |
| Transcript |
| ENSKKQT00000052587 |
| Protein |
| ENSKKQP00000045189.1 |
| UniProt accession | Description |
|---|---|
| Q0IIF2 | Translation initiation factor eIF2B subunit alpha OS=Bos taurus OX=9913 GN=EIF2B1 PE=2 SV=1 |
| Q64270 | Translation initiation factor eIF2B subunit alpha OS=Rattus norvegicus OX=10116 GN=Eif2b1 PE=2 SV=1 |
| Q99LC8 | Translation initiation factor eIF2B subunit alpha OS=Mus musculus OX=10090 GN=Eif2b1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006408 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01008 all species → | IF-2B | Initiation factor 2 subunit family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042528 all species → | Homologous_superfamily | Translation initiation factor eIF-2B subunit alpha, N-terminal | Interproscan |
| IPR042529 all species → | Homologous_superfamily | Initiation factor 2B-like, C-terminal | Interproscan |
| IPR000649 all species → | Family | Initiation factor 2B-related | Interproscan |
| IPR037171 all species → | Homologous_superfamily | NagB/RpiA transferase-like | Interproscan |
| IPR051501 all species → | Family | Eukaryotic initiation factor 2B subunits alpha/beta/delta | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45860 all species → | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0044237 all species → | Biological Process | obsolete cellular metabolic process | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005851 all species → | Cellular Component | eukaryotic translation initiation factor 2B complex | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03239 | EIF2B1; translation initiation factor eIF-2B subunit alpha | - | Translation factors | ko03012 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora austera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora austera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
