Gene detail

Detailed information of ENSKKQP00000045209.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029196032.1, cytoplasmic dynein 1 intermediate chain 2-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000052606

CCATGTATTGGTTATCCTGTGGTTGCATTGGGCTTAGCCCGCATTGATAAGTACTGGGCACTAATAGTCTTGATGTTCTGTTATCGTCGGCCATATTGGATGGGAAAGAAGAGATCATAGCCATGTCTGATAGAAAAGCTGAGTTAGCGAAAAAGCGGAAACGTTTAGAAGAGATTAAACAGGCTCGAAAGGATAAGCAAGATCAGGAGAAAGTCAAAACACCTACTGGGCAGAAGTCTCCTGCAGCAGGACCAGGGAGCAAGGAATCTGAAATTGATGAGCTGCTCAAGGGGATTATACCTGATGATGTGATTGATGGCAGGGCAGGTGGAGCATCCCTCTTGCAAAAGCAACCTGAGTCAGCCAGTCCAGGAAAAGATATAACACTGAAATCTCCTGTACAAATagaaaagaaaaaaccacTTAAGTTGGGCATTTCTCAGCTTACACAGACGAATATTCCACCAAAGgAACCTGTTTTATACAAcaaagaaacacaaacaaaaaatttgGAACCAGAAGAGCCTCCAGATGAATTTGAGGCCATTGTTCCTCAAAAACCAAAGGAGGCAGAACCACAAGCTGAGACTGAAGCTCCTGGAGAAGAGAGCAGAGAGGAAGTTCCTGTCATTGAGCTCAGTGAAGAACAGAAAGCACACATATTAAATTCTGGAGAATTTAGCAAGTTCTTTGATAAAGCTGCAAGATTGATGGAAAGAGCTTTATGTGAAACAGTGGACATCACGTTTGATTACTCTGGTGCAGAGGCCGAAGACACAGAGGGGGATACCCTAGCATCTGGCAAACTGGCATTTAATCGGGAGTTCTTTGATGAAAGGTGGTCGAGGCATAGAACAGTAACATGCTTGGACTGGTCAACACAGtACCCAGAGTTGCTTGTAGCTGCATATAACAATAATGAAGATGCCCCACACGAACCAGATGGTGTTGCTCTGATATGGAACATGAAATACAAGAAAGAGTCACCAGAATATATATTCCACTGTCAGTCAGGTGTGATGTCAGTCACTTTTGCTAAGTTTCATCCCAATTTAATCATTGGAGGAACTTACTCTGGTCAAATAGTATTATGGGATAACAGAAGCAGTAAGAAGACGCCTGTTCAGAGAACTCCCCTCTCTGCTACTGCGCACACGCATCCAGTGTACTGTGTCAATGTTGTGGGAACACAGAACGCTCATAACCTGATCAGTGTCTCCACTGATGGTAAAATGTGTTCATGGAGTCTTGACATGCTTTCTCAACCCCAGgACAGTATGGAGCTGCAGTATAAACAGTCCAAAGCAGTAGCAGTCACTTGCCTTTCCTTTCTAGCTGGTGATGTTAATAACTTCGTTGTTGGCAGCGAGGAAGGCTCTGTGTACACCGCCTGCCGACACGGAAGCAAAGCTGGTATCAGTGACATATTTGAGGGTCATTATGGTCCAGCCACAGGCATTGACACACACTCAGCTGCCGGACCTATTGACTTCTCATATCTGTTTTTAACCTCGTCGTTTGATTGGACGATCAAACTCTGGAGTCACAAGAACCCGCGGCCTCTGTATTCATTTGAAGACAACGGTGATTACGTTTATGATGTGCAGTGGTCACCAATCCACCCTGCTTTATTCGCGGCAGTCGATGGCACAGGAAGACTGGACTTGTGGAACCTTAATCATGACACTGAGGTTCCAACAGCCAGCACAAATTCTGAATCAATGACCTCACTGAACCGATTGCGGTGGACACATTCCGGTCACCAGATCTCCGTGGGTGATGATGATGGTCACGTGTTTATTTATGACGTCGGCGAGcaATTGGCGGTGCCAAGACCCGATGAGTGGTCCAGATTCCAGAATACTGTTCATGAAATCCAGGCCAATGCTTCGTCTGTTGGTGAAATGGGTTCTCCAAAGATGGCGTCTCCTTCCAAGATTCCTTTTAGTTAAGTAAGAGGTTTCCCTTTCTATCAGAGATAACCTGGCGTCTTATAGGTGTGAACTGCTCTATTTAAAAGATTTGAACTTCCGAATTCATAGAAACTGTAAAATGCCTCTAAAGTCTATGATTACAGATAATGGTGCTAGaactttcagtttcttttgggAAGGGATTTACTAGTTGAAAGTAAGAAATTTTAAGAATGCTTCTTCGACTGAATTGGACTCAATGAAAGGGAGTCCATCCTGTATAAGAATAGAAGATGTGCAACAAAGAAACGTAATAAGCATAAAAATGAACAGTGGTGTAAACACTTTGCATTTTTCGTTGGGACTAGGAAGTGTACTTTTAATTGTAGCTCCCATTTGTAATTTCAAGTACTTGAACACCATGAATTTCTTTTATGTGTTTGTTTACACCGAAAGACATTCctcaacaattaaaaaaaagtaccAAAATGACTCTTAAGCATCTTAGCACGCACGTTACTACACATtatccaatttaagcaatcgttCGGTTACTAGGGCTGAGTTTCTTGTGGAGCCTTGTAACAAGCACAATCAATAGAAACAGACCGGCCCAATTTCCAAACCAAACTCTTCCCCAGTGTCCCCTACATCGTAGACGGCCACGTCATTTATCGGCAGGCGGTGCGTTTTGGACGTGTTAACTTCCAAGACAGTTTTTCGCCACATTCCGTCTTTAATCTGAAATTGATCGATTAGTGAAAGACGTTGTTACCATTGCTATGAAACGAAGATGGGTGGAAACTTGTTTTCAGTCATTCATACCTTGCATTCGTCCATTACCATATTTGGAGTGTATTTTCTGGTGCCTTCCGCGTGCATCTCGATACCATTATCACCTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F6H7	Dynein, cytoplasmic 1, intermediate chain 2a OS=Danio rerio OX=7955 GN=dync1i2a PE=3 SV=2
Q0III3	Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus OX=9913 GN=DYNC1I2 PE=1 SV=1
Q13409	Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens OX=9606 GN=DYNC1I2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006423 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11540 all species →	Dynein_IC2	Cytoplasmic dynein 1 intermediate chain 2	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR025956 all species →	Family	Cytoplasmic dynein 1 intermediate chain 1/2	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR050687 all species →	Family	Dynein Intermediate Chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442 all species →	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0010970 all species →	Biological Process	transport along microtubule	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10415	DYNC1I, DNCI; dynein cytoplasmic 1 intermediate chain	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.