Gene detail

Detailed information of ENSKKQP00000045868.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029199208.2, general transcription factor IIE subunit 1-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000053265

AGAGGAGAGTTTTGGTGAACATAAATTTTGCgctcaaatttctttccaggcCTCAGAgaatagcgctatccagtgAATTAACATTCATTAGTCACTGTAAAGTGATATCCCCAGGAAGTAGTTCGATCGGGTTTTATCGACGGAAGACTGAAAACCAGATCAAGTTACAAGGCCTGGCTGCCAGACTTATCTCCTAcagaaaagaaacgaaaaagcGAGGAGAGCCGCGTGAACAGCACACGAATACTGTATATCATGAATGGTGCAGTTGACGAGCAAGAACTGCTCACAGTGGTTCCTCCAATACTTAAACGCCTCTGTAAATTGGTTGCACGTGGATTTTACGATAGTGAGCACGCTGCCATTGTCACATTACTGACGAACTCAAAGTACCCTTGTTTACAGGAGGATGACCTAAACCAGATGCTCGGATTTGACAGAAAGCAACTTCGCCAAAGTCTGGTGCGACTTAAGAACGAAAAACTCATTAAGCAAAGAGTCTACAAGGAGAAGAATCCCGAAACTGGAGCAACATTGAGCttcaattattatttcattaacTACAAGGTATTTGTCAACGTGGTGAAATACAAACTTGATCATGTGAGAAAGAAGATCGAGAGCGAAGAGAAACAGGCGAAAAACCGACCATCTTTTGTTTGCAGTCAGTGTCAGAAAAAGTATTCAGATCTGGAGGTTGATCGCCTTATTGATTCAGAAACACAGCTGTTGAAATGTACAATGTGCGATGGACTTGTTGAAGAAGACTCTTCAGAAATCAAACTCAGTAACAGTTCACGCACCAACTTGGCTCGTTTCAATGAACAAATGGAGCAGCTTTTTAGGTTACTGAGCCAGTGTGAAGACATGAATCTTGCTCCAGCAATTTTGGAACCAGAACCACAGGCTGCTCAACTTGCAGGTGCTGCGTCTGGACAACGGTCATCAAGTTCTCGTGACAGCAAATCAGGATGGGCAAATGACACTGGCAGTAGCGATGTCAGCAAACTGGGAATCAAGGTTGATATATCGGGAGATGATAGTACCGATGGTTTGGGAGGCAACAAGCCACCACCCAAAGAGGCACCCATTTGGATGCGTCAGAGCACAGTAGCATCATCTTCGGGTCTTCAAGATGAAGCCTCAGCCAGCAGTCAAGTGCCTAACAGAGAGTCTACTCCCAGGAAAACAGGAGGCAGTGCGAAAGATGAGGAAATTCTAGCAGAGCTGCTGGTTCATGAATCAGTGAACAAGAAGCCTCGCCTAGACATAAATGAAGCCCTGGGTGAGGGAGCTGGAAATGATGACAGTGATTCTGGAAGTGATGAATCGGACTTTGAAACCCCAACTGCAGGACCAGCGGCCAAACCAAGCCAGGTCACAGAATCCATGGAAATTCATACTGAGAGTGATGACGAGGACGACATTAAAATCAAAATTGGGGATAAAATGGTGGCAATTAATGATGTCACTGACAAAATGTTGAATCAAATGACAGCAGAGGAACATGATGCTTACACGAAAGCACTGCAACATGCATACAGCCAAATCTATTAGAGAAAGCATTTCCTGAATTATCAATACTCACTAACTTGTAATTGTGTGGTCAGATTATTCAGTATTTTACTGAAGCAGTAACTGGCGAAACTCAAAGGATATTCAACagtttctttcagttttaaacttttcctttttttctccaGCATTTGCTCTTAAAGCAGCAATTGTTTATTTAAAGATAGGTTTGCcatttaactttaatttttcaccAGTAACAAgccacaacaataattattattagacaTGCAGGAAAAGGGAGAAATCTAAGAAGAGATTTGACAGTCACAAAGGGATGGTgtggaaagataaaaaaatatttttatcaaGGAATATTGTGTGGATAGTTTATTTGTCACCCCAACAAGGTATCGCTAAGTCTTATCACGGATTGGGCAGCTCAAGGTGAAACTAAATGAATACTGACCGGTATATAACCAGAGGGAAATGTATTGAGAACTGAAGTACGGCAATAAATTTCTGATCTGCTAGGAATTTTTGACAAAGCAACAACAATTAACCCTGGTTTTATTTGGTTAGTTTTCCTAGACCTGAACAAAAAAGCTGTTTGTTGTGCACTTATTTATCCATTTCAGCACATAATTTTGTCTCAAACTTGTTCATGATTGATGCCTTTGATGTAGTGCATGTCTCAAGCTTTCTAAAAATATATTCAGCTTGCCATATGCATTTGAAGATAACATGGATCTCCCATTTTACTGGGATGTTTCATAAGACTCATGCAAAAATACCCCACCTATCTTTGAAACAATCTGGTAAACATTATCCCCAGCAAACACAAAGACCCCAACACAAATTATGACTCAGGGCATTTATGTACTGTAAGTACTAAGAAGTgctaaagaaaacaagaatgaAAAATGTATGAAATCAAATGTCACGTATTTGAACAGCATGATTCAGGATCTATGATGAAATACGAGGTTTCACATATATtagtcatctcttcatttgtaaGAATGTAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29083	General transcription factor IIE subunit 1 OS=Homo sapiens OX=9606 GN=GTF2E1 PE=1 SV=2
Q5R8H5	General transcription factor IIE subunit 1 OS=Pongo abelii OX=9601 GN=GTF2E1 PE=2 SV=1
A6QLI8	General transcription factor IIE subunit 1 OS=Bos taurus OX=9913 GN=GTF2E1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009102 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11521 all species →	TFIIE-A_C	C-terminal general transcription factor TFIIE alpha	Family	Interproscan
PF02002 all species →	TFIIE_alpha	TFIIE alpha subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039997 all species →	Family	Transcription factor E	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002853 all species →	Domain	Transcription initiation factor IIE subunit alpha, N-terminal	Interproscan
IPR017919 all species →	Domain	Transcription factor TFE/TFIIEalpha HTH domain	Interproscan
IPR021600 all species →	Domain	Transcription factor TFIIE alpha subunit, C-terminal	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR024550 all species →	Domain	TFIIEalpha/SarR/Rpc3 HTH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13097 all species →	TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001113 all species →	Biological Process	transcription open complex formation at RNA polymerase II promoter	Interproscan
GO:0005673 all species →	Cellular Component	transcription factor TFIIE complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03136	TFIIE1, GTF2E1, TFA1, tfe; transcription initiation factor TFIIE subunit alpha	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.