Gene detail

Detailed information of ENSKKQP00000047743.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_015754887.1, PREDICTED: DNA repair and recombination protein RAD54B-like [Acropora digitifera]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000055561

ATGAGACGTTCTGCTGCCCCTTCAGTCAGAGCtgcgaagaaaataaaattcagcaCTCCTTACATCGCTGGAAGTGATGCAAATTCAAGCGAAGCTTCCAGCCATTCAGCCACAATTGAGCTCCCAGCTATGCAGCATTGCGGCACAGATAAGaagGATGAAAACATTTCCGAGCCTTGCAAATCTGAAAGTAAACTAGACCATGAGAACAAATCTGATGTCACTGGAAGAGACAAATATAATTCAAGCGACGGAAAAGTCTTTGAAATAAAGAAGTTATTACAGCCCACAAGTACTGGTAACACTCCAGTTCCCAAAATGCATAAAACATTGCCTTTCAAGCCTCCCCTTCACTGGACATCAACAGATAAAAATCCATCTGgcACCTCTGATGAAAAGGAAAATGCATCTTGCTATTTCAGTGTTATTTGGGGAAAGATGTCAAAGAAAAAAGTAAGGTTGATTTGCCTATTATGGATGATTGTAACAGAAAATATCACATTGTCAAATAAACCAATTAGAGGCTATCAAATTTCTCTAATCAAATCTGTGGTGGAACCAGGGTTTCCAACCAGCACGCAATATTTagattttcttctttcttctttccaGCATAAGAAGTGGGAAGGAGATGGCATTTTAACTACCAAGGGAAGGACAGCATCTTTGAAAGATTTGGAAGGAAAAGAAATTGCGAAGAGCAGTGGTTATAAATCATCTGAGCTAGAATGTCTTCAAGAAGGAAACACATTGTGTGTTGGTGGAAAAGAAATTGAGGTGATGGGTTTTATCCGTGCTGAAGATTTTCTTAGTGGGAAGTGCTTTCAACAGTCTGAAATCTCAACATCATCACTAAAGCTCCCAGTCTTAAAGTTTCCTACGAAACAAAATGGGACACCAAAGCCTTTCGTTTGTAATGTGAAGAGGGACACGTTAGTGGATGCTCGAAAGCTGGTTTTGCCACGTCATGACGTCAACACTCCCGGAGCCCTGGTAATGCCTCGACCCGGTGCTGCTCAccagTTGGAACGTAATAAAGAAAGACTTGGAGTAGTAGACGTGATAGTGGACCCACACTTGTCACAGCACCTGAGGCCTCATCAGAAGGAGGGTGTTAAGTTCCTGTATGAGTGTGTCATGGGGCTAAGGGATTTCAACGGCAATGGCGCTATTCTTGCaGATGACATGGGACTTGGAAAAACCCTTCAATGCATTTCTGTGTTATGGACACTTCATAAACAAGGCATGTATGGGGGGCGTCCCTCCGTCAAGAGAACCCTGATCATTACTCCAGGAAGTCTGGTCACGAACTGGAGCAGTGAGTTCCGCAAGTGGCTTGGTAGTGAACGGCTGAAGGTGTACACCGTTACATCGGAGAAAAGAGTCAAGGGATTTGTTGACAGTCCTCTTTATCCCGTGATGATAATCAGTTACGAGATGTTTTTGCGGTCAGTAGAGGAGATCAGGAGCATCAACTTTGGACTTGTCATCTGCGATGAGGCACATCGCTTGAAAAATACCAACATTAAAACCGCAACGATGATTTCCGGACTTAAAACTAAGCGTCGTATCCTTCTGACGGGAACACCAGTGCAGAATGATCTTAAAGAATTTCACTCGCTCATCGACTTGTGTAATCCAGAAACTCTTGGTACTCAAGCTTCTTTTCGCCGATTATACGAGGAGCCCATAGTCCGCGGACAACAACCTGATGCCAGCGGTGAGGAAAAACTCTTGGGACAAACAAGAGCTACTGAGCTAAACAGGCTGACGAGTTTGTTCTTCTTAAGACGGACGTCAGAAATAAACAGCCAGTATCTTCCTCCAAAGGTGGAGTCTGTGGTTTTTTGTCGTCCCAGTTCTCTGCAGCTTTCTCTGTACCGCCATCTTCTCATGTCGCGTTTTTTGAGGTCATGTCTGACGTCATACGTCTCAGGTGGCTCTTGTCACCTGGTGTGCATAAGCGCCTTAAAAAGGCTTTGCAATGATCCAAGTCTCATTTACTCGCAATGCCAAGACGCAAATGATGTGTCGGAAGGATTACTCCTTTCAGGCTATGAGTTCTTGAGACTTGATGGTAAAACACCAACAAACAAACGTCAATCACTGGTGGATCGCTTCAATGACAAATATTGTAAAATATTCGTCTTTCTGTTGAGTTCTAAAGCTGGTGGAGTGGGCTTAAATTTAATTGGTGCCTCAAGACTTATACTCTTCGATATTGATTGGAACCCAGCCAATGACATTCAGGCCATGGCAAGAGTTTGGCGAGATGGACAGAACAACACAGTTCACATTTATCGCCTTTTGACAACGGGAACAATAGAAGAGAAGATCTACCAGCGTCAATGCGCCAAGCAAGGTTTGAGTGGAACAGTAGCTGACGCAAaggaaactgtgaaaattgaGTTCTCAAGGGAAGAACTAAAGGACTTGTTTACACTTCACGAAAACACTCTGTGTTTGACGCATGATCTGTTACAATGTACATGTCTGAATTCGGAGGATGATAACAGCAACAACGAATGTGATTCAGATATAAGAGACAGCGAACAGTCAAAAGCAACTAGACCATGCCAGTTGGGATTTTACGACACCAACCAAAACCAAAATAATTTGTCTTTAGCTGAGCTGGTAAACTGGCAACATTTTCCACGCCCGAGTGTACCTGCGTCTGACTTTGAGGATGACGCTGTGAAGGAAGCAGGGAGTACAGATTCAAACCAACAAAGACTTAAATAA

Transcript

ENSKKQT00000055561

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DG67	DNA repair and recombination protein RAD54B OS=Gallus gallus OX=9031 GN=RAD54B PE=2 SV=1
Q6PFE3	DNA repair and recombination protein RAD54B OS=Mus musculus OX=10090 GN=Rad54b PE=2 SV=1
Q9Y620	DNA repair and recombination protein RAD54B OS=Homo sapiens OX=9606 GN=RAD54B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001229 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050496 all species →	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629 all species →	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0015616 all species →	Molecular Function	DNA translocase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10877	RAD54B; DNA repair and recombination protein RAD54B	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.