Gene detail

Detailed information of ENSKKQP00000048003.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_015760179.1, PREDICTED: putative RNA-binding protein EEED8.10 isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSKKQT00000055944

ATGAATAGACTTTCTTCAAACTTGCACAAACTCAGAGCGCTCCATCAACAGGAACGGAGCAGAGGTTTATTTGCAGCTATATCGTATGACTCTGTCCTCGTGGAAAAACCCATCACATCAGTGCAAACTACTAACTGTCTCGGAAGTGTGATAATCCCTTTGCAATCGGGAGAGTTGTTGCAAAAAGCAAAGGAATTTTGCCGCCAAACTCGAGTGGTTGCAAATAAGTGTAAAGTATTCGTTGGCAACGTTAGTTACAGGGTTAAGTCAAGAAAACTAaaggagtttttcaaaaattttggaCAAGTAATTTACGCAGAAATCATAACGGATCATAAGACAAAACGCTCTCGAGGagttatggcagTCTGTTcaGAGGCTTTGGAATTTTATGCTAAGAATGATGAGAGTAGAGAAACAGATAGTGTAATGGAAGATGATTCTTGCAGCAGTGACACAAAGCAGCATTCTGAGCCACCAATATTTCGACTCAATGAGGATGCCATTCTTCACATTTTCTTGTATTTAAGTGCAAAAGATAGGATACGCATTGAAAGGGtttgcaggaaatggAGAGTGTTAGCAATTAAGTCATGGCGTCATACCACCCACCTTGACttccaaggggcttttgcttcATTCAGAGGTGTTGGAGGTCTAACTGATGAAATTCTGTGGTCAATTTTGAGACGAGGTTGCCATAACCTGAAGTCATTGGACTTGTCTCTTTCACCTCATTTCTTGACTGATTTTTCAGTCCTTTGCATTGCAAAACAGTGCAAGTCATTGGAAGAGCTGAAAATCAGTGGTGTGGAAATGAGTACATCTTCATTGAAAGTGCTGGCTAAAGGCTGTTCAAACCTGGAGAAAATTACCCTTCAGGGGTGTTATAAAGTTGGTGAAAAAGCGCTCTGGTGGCTTTTTAAAGATTGTAAGAAACTCACTTACATCAATTTACAAGGAAATAGAAGTCTTAAAGGCCAGTGTTTCTTTATGCTGTCACCAGTATGTGTGGATCTCCATCTTAAGGAATGTAATCAGTTGACAGATAAAGGAATAAATCATATTGGGAGCAACtgtaaaaatttgaaaaacatcGACATCTCGGAATGTGGAACACTAACTGATGAGGGTATTCTTAAACTTACACAGGTAAAATGTATGTTACTCTCTTATTTATTTGTAACCAGTCAAGGATTACAGAGCATTGGGAATTTAGCATTACTAAGAGAGTTGGATCTGTCCAATAATTACGTGGTAGATGATTCTGTGTTGTACAGCATTGGAAGAAACTGTATCCATCTCATTTCTCTTAATGTGGAATCTTGTCAAGTTGGAGTCACTAATGCAGGGTTGCATAGTTTGGTGTCCTGCTATCAGCTCTCTTCACTTTCAATCAGCTATGTGAACAAGATCACCGACGATGGTATCATTCAGCTGGCGGCTTGTGGATCTTTGGAGCGAGTTGTAGCCCGAGGGTGTACTGGGCTCGCTGATATGTCTATCGAAAGTCTTTTAAAACACTGCCGTAACTTGACAGTGTTGGATGTTAGCGGATGTTCTGGTATCACAAACTGCTCTCTTGAGCTTTTCACTTTGTACTATGGAAGAGGCGATCGACCATTTCTTACCTGTACATTGGGAGgtacaGCAGTGGAGGAGAACGAAATCTTCAGAGTCCAGCCGACGTTGTGTCAGTGTCAGCTTCTTTGCAGTGACTTTTCCATCCCTGAAAGGACTGAGGCTGTCCCTTCGTATGGTTCAGGTAAGACAGATCTACTCTTCACGGGAGGGGAGGGTGCCTTCTACTGCGAGGGAAACGAGAACGATGATGACGAGTTTGACGATTTCGCCGACGATGAAGAGGACGATGATGACAAACATCTCCTTAACGTTCTTGATGACGAAGAGGTTTGGATGGCTGAAGACTCGTTGTGGTGGCGACCCGATGACGCGGTGGATTTCCTTGAAGCCGATTATCCCTCTTTATTGGCAGAGCAGCTGCACAGATCATAA

Transcript

ENSKKQT00000055944

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala