Gene detail

Detailed information of ENSKKQP00000049517.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029193745.2, semaphorin-5A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000057747

ATCACTatcagtgtgacgtcacatagcgaCAAGTCAAAGCTTCtcttggcttggttagtttagcgtggagaagccattgatgtagaaagGAAAAATACTGGCCTTtgttgactggttatttagcaatttgtcgtagAGGTGTTGGAGATGACAAACAGTATAACGAAGATGAAGTTGATGCTATTGGCTCTTTGTTTCACGTCCATAGCAAGCCAGGAAGAGTCCATTTCATCTTATGAAGAAGTCAAGAGGTTTGTGAAAACCTTCAAGCCAAGAGGAATGAACACAAGTACTTATTACCTACTCTCCATTGATAAAAAATACAACAACCTTGTTGTTGGGACAAGACATAATGCGTTCTTGGTGAACTTGGACGATATGGAAAGTTATGAGTCGTGGAATGTGTTGCAAAAGCGTGGAAATGACAATTTTCTCAAGTTGATGTTACCCTTTGGAGACAGAATTTTCCTCTGTTGGGTTGAAAAACAATTTACGAGAAGCTGCACTTGGAGAAATAGGGTAAATTTAGGCAAATCTCCAGAAAGCGATCAAGGATATGTGTTCAAATCGGAAAAAAAGTACATTGCAGTAAGTTCATCACCAGAGCAGAATGACACAGCCATTATCACAGAGGATGGCACTCTCTTTGTTGGAACATTTGAAGATTATTCAGTCATCTACAGCAAGAGGTTCAAACAGCCCAAGCTGAAGGAAGTTTATTCTGAGAAAAAGAGTTTTTATGAAGatGTGCATTTCGTAAAGAGCTTTGAAATTGGCCCATATGTGTACTTCTTTTTCCGCGAACGATCGTTGGAATGCGACAGTTGCGGAAAGGCTAAAACTTCCAGGGTAGCAAGAGTGTGCACGGGCGATCGTGGTTACTTAAGGCTCTTCAGTTTTTTTGTAACCTTCCAAAAGGCCAAGTTAATGTGCAGTGATGGGATGAATTACGCGCTGAATTTCAATGAAATTCAGGATGTTTGGTGGGACGATCGTACAGGCCGATTTTATGCAGCTTTCAGCTCACAATCGAATGGTCCTGCGATATCCGCTATTTGCATTTACAGCTTGTCATCAATCAATCGGATTTTCAACgaaagtgatttcaaatctttCACAAGTGAAACTAAGGGTTGGGCCATGAAAAAGAATAATGTTGGAGAATACTTTCCACGCTGCGAAGTGAATCCGAAATACctcaaaaattcttcttctGCTGTTGCTGACGGCGTGATGCCCACGAAAGAGTTGCTCAGTTCAGCTTACAGAGAGCTAAAACACGATCCATTGATGTCTGATGGAGTGGCGCCTGTTGAGTCGAAAGCATGGTTCATTAGAAACGGGATCAGAATGACTGGTATTTCCCTGGACGTCGTTGGGCCGAACACCGTGGTGTACGCTTCAACAGatcGAGGGTCTGTTATGAAAATTTCGCAGCCGCGAGGATTCTCTCATCCATGTCTTCATTCTGAAATGGAAGTTTATCCTtcGAACAAAACAGAGGTCATCAAGACCATGGTGATTGATCAGGGTCGGCATGCTCTGTACTTGGGGACACGTTATTCGCTTACACAACTGAGTTTGGATCAGTGTGAACGATATCAACACGACAAGAGTGCATGTATTTTGACTGCTGATCCTTACTGCGGCTGGGACAACAAAACATCGCTCTGTTCTTCTGTTCTTTCGGATGGAGGGAGACTATTACAAGATTTGACAGTCTGCCCAAAAGGACGCAAAGAAACTAGCTGGTCTCCATGGAGAACCTGTGTTCAAAGCGACGGAAATCTTTGTCGTTGTCAAACACGTCGCTGTCAAGAAAAGGGAAAGACACCCTGCCTAAATGATGTGGAGGTCCGATTGGAAAATTGTACAGGCGTTTCGGGAGGACAGCAGGAATCTCAACCAACATCAGACGACTACAGCGTTGGTTCTCTAATTGCTGCATTTGTGGGCGGCATCGTGATGGGTTCGGTTCTCTTTTATTTGGGTTGGGTTTTTTACAAGAAGTACAAAAAAAGGAAGTCCAAATGAAACTTGAAATACTGTGCTGGTGAGGAAAGCAAGTTTGCCATTCTTCCATCAGTGACTGACGAATCGCTGAAAATGGCGTATAAACGTAAAGTTTCCGATAAGGAATGATGAGGGAGGCTACTTGCTGTCCTGTAGATTGCGTATAGCGTCGTAGAGTTGGCTTGGGAAAAGCATTTACGTAACGCAAGGAGTAAGCACGCGACTCACGCAAGGTTGCGTGAACACAAGGTAGTGATTGATCACACTTTCACAATTTCATATTCGATCGTCTGTTCCTTCCATATTTCACAATTTTCTAACACCTGTGATAACTGTCCACTCTTGTAACGCAAGAAACTCAACTAAACtcaatttttcctttcaaaagtCAGGGTAAAATTCACTTTTAAATACCCTGTTTCAGTCTTTTGGGAAACTGTCCCCTTGACGCTAAAAGTGGCAATTACAAAGCCCAAACCAATTTAAGAAACTTTACAAAGCCCACTTAATCTCTTGTCAATCAAAATGAAATATGCTTTATTAGTAtt

Protein

Uniprot

Uniprot term	Description
Q60519	Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2
Q24323	Semaphorin-2A OS=Drosophila melanogaster OX=7227 GN=Sema2a PE=1 SV=2
Q90607	Semaphorin-3A OS=Gallus gallus OX=9031 GN=SEMA3A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403	Sema	Sema domain	Repeat	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR016201	Domain	PSI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan