Genomic Location: chr10:3164602...3169652
NR annotation: CAB4009968.1, Golgi resident GCP60 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000008911 |
| Protein |
| ENSLDHP00000008262.1 |
| UniProt accession | Description |
|---|---|
| Q8BMP6 | Golgi resident protein GCP60 OS=Mus musculus OX=10090 GN=Acbd3 PE=1 SV=3 |
| Q7TNY6 | Golgi resident protein GCP60 OS=Rattus norvegicus OX=10116 GN=Acbd3 PE=1 SV=3 |
| Q9H3P7 | Golgi resident protein GCP60 OS=Homo sapiens OX=9606 GN=ACBD3 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007472 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13897 all species → | GOLD_2 | Golgi-dynamics membrane-trafficking | Domain | Interproscan |
| PF00887 all species → | ACBP | Acyl CoA binding protein | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000582 all species → | Domain | Acyl-CoA-binding protein, ACBP | Interproscan |
| IPR009038 all species → | Domain | GOLD domain | Interproscan |
| IPR036598 all species → | Homologous_superfamily | GOLD domain superfamily | Interproscan |
| IPR052269 all species → | Family | Golgi apparatus maintenance and PI4KB interaction protein | Interproscan |
| IPR014352 all species → | Homologous_superfamily | FERM/acyl-CoA-binding protein superfamily | Interproscan |
| IPR035984 all species → | Homologous_superfamily | Acyl-CoA binding protein superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22973 all species → | LD35087P | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000062 all species → | Molecular Function | fatty-acyl-CoA binding | Interproscan |
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23935 | ACBD3; golgi resident protein GCP60 | - | Salmonella infection | ko05132 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
