Gene detail

Detailed information of ENSLDHP00000011554.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: XP_028398119.1, U3 small nucleolar ribonucleoprotein protein IMP4-like [Dendronephthya gigantea]
Species abbreviation ECAVO · all data for this species · gene families

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13823	U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp4 PE=3 SV=1
O62518	Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans OX=6239 GN=ZK795.3 PE=4 SV=1
Q96G21	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens OX=9606 GN=IMP4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001859 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427 all species →	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044281 all species →	Family	U3 snoRNP protein/Ribosome production factor 1	Interproscan
IPR007109 all species →	Domain	Brix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22734 all species →	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034457 all species →	Cellular Component	Mpp10 complex	Interproscan
GO:0042134 all species →	Molecular Function	rRNA primary transcript binding	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01611	speD, AMD1; S-adenosylmethionine decarboxylase	EC:4.1.1.50	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.