Gene detail

Detailed information of ENSLDHP00000012964.1 in Eunicella cavolini

Genomic Location: chr12:2189599...2237993
NR annotation: XP_028392579.1, probable phospholipid-transporting ATPase IIA [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000014124

ATGATGGTGAGATTTGAAGATGTACCACTTAAGCCGCGCGGAAAATGGAAGCGAAAGAGGACAAAATATGAGGCTGTCGAGGGGGATGAAGGCGATTCTAGTTACGATGAAGAAGACACACTTTACTCCTCTGACGGTTATATCTCCGTTGATACTGATGGAGACGAGGAAGAATTAAAAAGAAGAGATTATCATTATCGACGTGCTAGATGGTTTATCTGCTATGGCTGGAAATGGTGGTGTCAGAGATGTTGTAATAGGTTATGTGGAACTGGTGAGTTGAAAGCAAGAACTGTCCATATTGGAAAACCaTCTCCACATCAAGACTACCCTGCAAATGTTATTAGAAATCAGAAATACAGTATATTGACTTTTATACCCTTGGTACTTTTCAATCAGTTCAAGTTTTTCCTAAATCTTTATTTCCTGCTTGTGGCAAGTTCGCAGTTCATTCCTGATCTAAGAATTGGTCATTTATATACATACTGGGGACCGTTGGTGTTCGTTTTATTTGTGACAATGTGTAGAGAAGCCTTTGATGATTTCGTAAGATTTCTCAGAGACAGAGAAGTTAACTCTCAAGTTTATAAAAAGTTAACAAAGAAAGGCATAGTTCCAGTACCGAGTTCAAATATTCGAGTGTCTGACATTATTATTGTAGAAAAGAATCAAAGAGTACCAGCTGATATGATATTTTTACGCACATCTGAAAGGAATGGCTCGTGTTTTATAAGAACAGATCAACTTGACGGCGAGACAGATTGGAAATTACGCATTGCTCTTCCTGCGTGTCAAAGCTTGCATTCTGACCATGATTTATTCAGTATCAACGCGTTCATTCATGTCGAGAAGCCACAGAAAGACATCCATTCATTTGTTGGGACGTTGGTCAGGAAAGTTGAGAGCGAAGGTGAAGACCCAGTGAATATCGAGAACACGTTATGGGCCAACACTGTTGTAGCTACAGGAACAGCCGTTGGTATCGTAGTGTATACTGGTCGTGAAACAAGAAATTCCATGAACACCACCTCTCCTACAAGCAAGGTTGGCTTACTGGATGTCGAGGTGAATAACCTAACAAAAGTACTGTTTATTGCGACCATGACTCTCTCTCTTGTACTAATATCTGTAAAGGGTTTTGATGGTCCATGGTATCGCTATTTCTTCAGATTTGTCTTGCTTTTTTCCTACATAATCCCGCTAAGCTTACGTGTAAGTCTGGACCTGGGTAAAGTTGTGTACTCGTGGATGATAACACGTGACTCGGAGATGCCTGGCACAACGGTGCGCAGCAGTACAATACCAGAAGAACTGGGGAGAGTGGCCTACCTACTGACcgataaaactggaacgcttaCTCAAAATGAAATGGTTTTTAAGAGACTTCACCTTGGTACTGTGTCGTTTGGTCCTGACTCAATGGACGAGGTTATCACACACTTACGCACGGCAACAGCAACCGTCGTCACGACAGCATTAAAGAAAACCGGACAATCAAAGGTTCGACGTACGGTTGTGACTCGGGTCCACGAGGCAGTCAAAGCGTTGGCATTGTGTCACAATGTTACACCCGTACGTAAAGGAGAGGAGAATGGGGAGAGTGAAGAATCATCTGGTGCGGCAAAGCAGAATGGGATTGCAGATGATAATGAGGGTGATGTTGGTGCAGTGAGCGATGATTTCACTTATCAAGCGTCCAGTCCTGACGAGGTTGCTCTAGTCACCTGGGCTGAAACAGTTGGTCTAAGTTTGATAAATCGCGATCTCACCACCCTGACACTTCGCTCACCGCATGGACAGATTATGAAATACGAAATGTTGCAGATATTTCCCTTCACATCAGAATCCAAGAGAATGGGGATTATAGTTCGGGATCAAAGTACGGGAGAAATCACATTCTATTTAAAAGGAGCAGATGTCGTGATGGCCAATATTGTGCAATATAATGATTGGCTTGAAGAAGAGtGTGGAAATATGGCTCGTGAAGGACTCCGAACTCTGGTTGTTGCAAAGAAAGTTCTATCTGAAGAACAATATCAAGATTTTGAGTATCGATACAGTCAAGCCAAAGTCAGTTTGACAGAAAGAGCAGCAAAGCTAAGTGCTGTTCAGAGCAGCCTGGAAAATGATATGGAACTACTCTGCCTTACTGGGGTTGAAGACAAATTACAGACTGATGTTCGACCAACACTCGAGTTACTGAGAAATGCTGGAGTAAAGatCTGGATGTTAACTGGAGATAAACTGGAAACAGCGACTTGCATCGCGCAAAGTTCACGACTTGTCTCCAAATCTCAAACCATTTATACATTCAAACAAGTTAATGACAGAACCGAGGCTCACTTAGAACTCAATTCATTTCGTCGGAAGATTGATTGTGCATTGGTTATCAAAGGCGACTCCTTAGAGACATGTCTAAGACATTATCAACAAGAGTTCATGGAACTAGCATGTCGCTGTCCAGCTGTAGTGTGTTGTCGTTGCTCACCACAGCAGAAGGCTGATATCGTAGAACTGTTGCAAACTTACACGAAGAAACGGACATGTGCTATTGGAGACGGAGGAAATGACGTCAGCATGATCCAGGCAGCCAATGTTGGAGTAGGAATCGAAGGAAAGGAAGGACGTCAGGCGTCTTTAGCCGCTGATTTCTCAATCACGCAGTTCAAATATCTTGGTAGATTGCTGGTTTGGCATGGTAGAAACAGTTACAAGAGGTCGGCTGCTCTTAGTCAATTTGTTATTCATAGAGGTCTTATCATATCAATCATGCAGGCTGTGTTCTCCAGCGTATTTTATTTCGCGTCCGTTGCTCTTTATCAAGGCTATCTCATGGTCGGCTATTCCACTATATACACTATGTTCCCTGttttttcattggttcttgaTGAAGATGTCACAGCTGACGTAGCGCTAAGGTTTCCCGAGTTATACAAAGATTTGTCCAAGGGTCGTTCACTGTCGTACAAAACATTCTTCATATGGATATTAATCAGTATATACCAAGGAGGGATAATTATGTTTGGCGGTATTTTATTATTTGAAGAAGAATTCATTCATGTTGTGACAATAACATTCACTTCGTTAATTCTTACTGAGCTTTTAATGGTTGCATTGACTATACGAACGTGGCATTGGTTGATGGTTGCGGCCGAAGTATTCAGTCTGGCAGTGTATATTATAACTTTGGCTGTATTTAAAGACTATTTTGACGAACGATTCTTAATCTCACTAGACTTTCTATGGAAAGTGACTGTAATCACGTTGGTTAGCTGTCTTCCTCTATATATCTTGAAATTTTTACGCCGAAAGTATGCGCCACCAAGTTACTCGAAACTAACGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1Q4S1	Probable phospholipid-transporting ATPase IIB OS=Danio rerio OX=7955 GN=atp9b PE=3 SV=1
A1A4J6	Probable phospholipid-transporting ATPase IIB OS=Bos taurus OX=9913 GN=ATP9B PE=2 SV=1
O43861	Probable phospholipid-transporting ATPase IIB OS=Homo sapiens OX=9606 GN=ATP9B PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003813 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF16212 all species →	PhoLip_ATPase_C	Phospholipid-translocating P-type ATPase C-terminal	Family	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF16209 all species →	PhoLip_ATPase_N	Phospholipid-translocating ATPase N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR032630 all species →	Domain	P-type ATPase, C-terminal	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR006539 all species →	Family	P-type ATPase, subfamily IV	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR032631 all species →	Domain	P-type ATPase, N-terminal	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24092 all species →	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0045332 all species →	Biological Process	phospholipid translocation	Interproscan
GO:0140326 all species →	Molecular Function	ATPase-coupled intramembrane lipid transporter activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01530	E7.6.2.1; phospholipid-translocating ATPase	EC:7.6.2.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →