Gene detail

Detailed information of ENSLDHP00000013128.1 in Eunicella cavolini

Genomic Location: chr13:4910603...4926661
NR annotation: CAB3996201.1, zinc finger [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000014310

ATGGTTTACAGGGAACTCCACAAGGAAATGGGACACTTAAGGATATTTAATGACTTCATCCAACGGTTCGGCTTTCCAGAAAAAATCCACTATGACATGGGCGGGGAGTTCGAGAACCATCTTTCCAAACGGTTAGAACAACTATCTGGCGTGACGCACTCCAGGACAACACCGTATCACCCCCAAGGCAATGGCATCGTTGAGCGAATGAATCGTACTTTGTTAGGCATGCTACGAACATTACCAGAGTCTTATAAGTCAAAACGGAaaaatcaccttaacaaatttattCACGCGTACAATTGCACAGTGCACGAGTCGACAAACTATTCGCCATTTTATTTACTTTTCGGGAGAAGTCCCAGGCTACCTATTGACTTAATATTTGACTTAACAGACAAAGCGGGAATGTCAGTGGACAGGGGGGGTGTGAATACTAGCAGTGGGGCAAAATTACCAAAATTGCCTGAGTTTGTTGATGGGAAAGATGATTTGGATAGTTATCTGCAACGGTTTGAGCGATTCGCTAAAGGAAATCAATGGAAGGAAAATACTTGGGCAACTTCTTTAAGTGCATTACTTACTGGACGAGCGTTGGATGTGTATTCCAGGCTATCCGAATCTGCTGCTGTAGATTACCCCCAACTCAAAGAAGCTCTGTTGAAAAGATACGAGCTTACTGAAAATGGGTTTAGAGTTCGGTTTCGAGACGCAAAACCAGAGGATGGAGAAAGTCCAGAGCAATTCATGACACGTCTGCAGCGATATCTTACCAGGTGGGTGGAACTGTCCAAAGCAGATAAGTCGTATGATGGCATGTGTGATTTGTTTCTCAAAGAACAGTTTATTCGATCTTGTCCTACAGATTTATCAGTATATTTGCGCGAGAGAGATCCTGAAACCCTTCAAGATCTAGCGAAGGTTGCTGAACAATTCCTTATCGCACATGATAGAAAATTGTCCACACCAGTGCAACCACCGAGAAATAACCGAAATTTCAAAAATGAGAAGAGTGATGAAAAAGGGAATGGAGTGGGATCTCAGTGCTACAATTGTGGAGAAACAGGCCATAAACAGGCAGACTGTCGAAAGCCAAAGAAAGACAACAAAGGTTCTCCAAGGCGATGTTTTGTATGCGACCGTGTTGGGCATCTAGCAAAAGATTGCAAAGCAACGTTGAAGGGAAAAGATCTGTCTAAGGCAGGTGCTGCACAAAGTGGTGATCCAGCAATTGGGGAATTTACCGTGAACGCTCTAAGAGACACTGGGTGTAGTGGAATGGTCGTTCAGGAATCGTTTGTCAAGAAACACCAGTATACCGGTCAATACTCCTATATGTTGCTGATTGACAATTCCATTCGAAAGCGTGAAACCGGTCCACAAACTGGAGTCGACGTCGAGCAAGCAGTGCAGGAGGGCGGTGGAGCGTGTGTCAACTCCAAATGGGTATTTCAAGTGGCCGGTGCGTCAATAATTGAGCGAAGCGAGGGTAGTCCCGAGGAAGCCGTAGATGACGACGACCTTCTGGAATTAGGAAGCACGTCTCACAAGGAGTCAGTAGCAGAGGTCACTTTCGGCGGACAGTTAAATGAGAATCAAAGAGATCAAGCGGAGCGGTTAGTTGGGCGTTTCGCAGCGTTGTTCACGGATAAACCTGGAAGTACAAACATCGTCGAACACGAAATCAAGTTAACAAGTGACGAGCCTATACGCTCAAAGCCATACACGATTCCATTCAGCGTACGGGAGTCGTTGAAGAGTGATATCAAGGATATGTTGGATATGGGAATCATTAGAGAAGCCAAGTCGTCGTATGCGTCTCCTGTCGTCATCGTTCGGAAGAAGGATGGCACCAACCGAATATGCGTAGACTACCGTAAACTCAACCGCCTGACTGAAGTCGATCCGACTCCTATGCCTAACCCAGATGAGATCTTTCAGAAGATGGCGAAAGCAAAGTTCTTAACGAAGTTAGATCTAAGCAAAGGGTATTGGCAAATACCAGTAGCGACAGAAGATATCCTGAAAACGGCATTCGTCACTCCAGATGGGTCCTACGAATTTATGAAGATGCCATTCGGTATGGTCAACAGCGGAGCCACTTTGGTGAGAGGTCTTCGTAAGTTGCTAGGCGACATAGAAGAAGCCGATAGCTTTATCGATGACATCATTGTTTTCACGGAGACGTGGGAGCGGCATCTCGAGGTACTAACAGAACTGTTTGACCGCCTGTCGAACGCGAGGCTGACGGTGAAACCCTCGAAGTGTGTAATAGGAGCAGAGAGTATTGAAGTCATTGGTCACCAGATTTCTGCAGATGGAATCAAAGGCCTTCACCAAGACAACGTGGAGAAGATTAAAAATGCCAGAAGGCCCAAGACCAAAAAGGAGGTGAAAGCATTCCTCGGATTAACAGGCTACTACCGAGAGTTCATACCGAATTACGCCGCGAAGGCTGTACCATTGTCCGACTTGCTCAGAAAAGGTCGGCCAAATAAGATTGAATGGGGAGAAGCACAAGAGAGAGCATACACCACGCTCAAGAGCGAGCTAACGAATTCACCTATCCTCCACCTCCCAGACGTGACGAAACCATTTGTCCTTCGAACAGACGCTTCTGACGTGGGAGTGGGAGCGGTACTATTACAGGATCAGGCAGGAAAACTTTGTCCCGTTAGTTTTGCAAGCAGGAAGTTATCAGATCGTGAGCAGAAATATAGTACTATCGAGCGGGAATGCCTTGGTGTCGTATGGGCGGTACGAAAGTTTTTGCTGTGTCTCTATGGCTCGGAGTTCATCCTTCAGACCGACCACCAGCCGCTGGTTTACTTGAATAAAGCGAAGTTCTTGAACGATCGAATAATGAGATGGGCTATGTTCCTGCAGAACTATCGAATAAAGATTCAAGCCATAAAAGGAACTGAAAATGTTGGTGCAGACTACTTAAGCAGATCCGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF13683 all species →	rve_3	Integrase core domain	Domain	Interproscan
PF02023 all species →	SCAN	SCAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR038269 all species →	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR003309 all species →	Domain	SCAN domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000013128.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.