Gene detail

Detailed information of ENSLDHP00000015560.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4028582.1, trinucleotide repeat-containing gene 6A -like, partial [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000016913

ATGCTTCAAGAACAAGATGCTGCAAAGAGTGCCGATGATGAATATCGATGTGAAGAAGATGATAATGAAATTGATATTGAGAGAGAGTTTGAAAGACTTCTTGAGATTTTAAAGAATCGTAGGAAGAAAGGCAAAGAAGTTCCTGAAGATATGACACAAGACAAAGTTACGAAGTGCAGAGACAATCTTGTGCGACAAAGGGAAGAAGCCACGAAAGATCCTAAAAAGCAACCACCAAAGAAAGGAAAGCAACAACAGGTTCCAGTTTCTAAGCCAAAACCAAAAAGCAAGAAACAACTTCTTGCCGAACAGAGACGGCGAGAGAAAGAAATGGAAAAAATTGCAGTTGAACTCGAGAAGAAAAAGAAGGAAGACGAGGAGAAGGAAAAGATCAGAAAACAGTTGGAGGTAGAGAAACAGAAACGTTTAGaggaagaaagaaagaaaacgGAAGCAGAGGCAAGACGGCAAAGAGAAAGGGAACAAAAGGAACGCGAGAGGTTGCAGAAATTAGAACAAGAACGAGAACGAAAACAGAAGGAAGAAGAGGAAAGGCGGAAAAAAGAAGAAATGAAACGAAAGAAAGCAGAACAAGAAAGAATTGAGAAAGATAAAGCTGAGAAAGCCGCGAAAATCAAGGCTGCCCAGCAAGCGGCGAAAGAAAAAGAGGAGCAGGCAAAGAATAGCAACAAGAATCAGAATGTGAAGCGTAATCAGCCACAGCGTAATGATCAGACATATCCTCGAGAAATTCCGCCAAGGTTTCAACGAAGAAtgaaacaacaacagcaacagcaacagcaacaacagacTGTGTTCCCACAACAGTTACCAAGCACGTCAATTTCTCAAATAACACCAGTCCAACCACAGGCCAGTTCACAGACTCCGCAAACTGTACAGGCCAAGGCTGTGACGAAACCATCTCCTATGGTCGGCAAGAAAAAGGACCCGCAGCGCTGGGTCAAAGGTGAGTATACAGGGATAATTAAGGACGTTCAGGATGATTCAGGGTGGTCGGAAGCACCACCTGCAAAAACCTCGGAGAACTGGGAGGAGACTACGGAGGATTGGGGTTGTGAAGGGACATCTTGGGATGAAAAACCTATTGGCGATGAACGAGTAATTGTGGATAAAACTGATCAGGACTCTTGGCCTACCGTCGGTGTTAAGGGGAATAGTAGAGAGGAAATTTCTGGAAATATTGACGCTGTTTCGGAGAAAGAAAACATGAGTACATTTGGGGATTCTTTAGACGCTGTCATTGATGGGATGGAAGCAGCCGAAGAGGCTGCTGGAGCTGGATTATTAAATTCTGGGAAATGGAATTCGGAAATTTCTGGGAAAGATAGTGGCATTGGGAGTTCTAGTAATTCTTCACAAGATTTTGATAAAGGCCAAACGTGGTCAAAAACTCCTGGAAAGGATGTGAAGTTAAAAGGAAATACAGAAAACAGTTCCGACAGTTTGTCAAATTCTTTGGAGGAATCTGCTCCCGGTTGGAACGAAGGTGCTTCCGGTTTGAAACAAACTTCTGCCGTTCCGAAACAAAATACTTCCGGTTGGGAAGAACAACCGGAAGTGAGTGACAGATGGAAGGCTGTTGGAAATCCCGGAAGTAAAACTGAACCCCCACCGAATGAGGAAACGGGTTGGGGCGAGAGTTCTCCAAACAAACGGAACAGCGGTAATAATTGGGGTGCTTCTTGGTCTGCGCAGGGGCTAAGCTTGACTGGGACCGAGATTTGGGATCAAAGTAGCGCAGATGCGACTGGGGACAAAGGTAGTGACTGGACTTCAGAGGATTGTAAAGGTAACATAGATACAGGATGGGATTCAGTAGGACAAgctggtggtgatgatggtgatggtgagtGGAACAGTTGGTCTACTGCAGGATCAAAACGAAATAGGGCTCCAAAACCCAACCCAGGAAATGACGAGAACGCCTGGCTTAGACGTTCTCTCAAACAGCTTGTTGATATGGGTTTTAAGGAAGTTGACGGAGAAAAGGCGCTCAAATCAAACAACATGAGTCTTGAAGCAGCCATAAGTCAATTACTTGGCGGTCAAGGCACTCCACCCGCGAGCCAATCTCCCCACGGAACTTCCCTACCTGTGGAACTCAATTCCGAGGCTACTGGTTCTACACAAACGGACGAgcaagatatcttaaaattGAACAGAAAACAGCGACGCCGACTAATGCAACAGAATTTAGGGCCTGAAATGCAAGCGACGAACACTGAACCTGTCACGGAAACCTCCGAAATGACTGATGTAAATGTAAACATGCCTGTTAGTTCGGCGGCAATTTCGGAAGTTAGTCGGGTGCCGATCTCTTCCGAACGCTCTGTAGATTATAGAAATGAATCAAGTCAAAATGAACAAACTGGTGTTAATTCAGACAGAAATGGAAACCCAGGAAATGTGGCGGCGAGTTTGGTGGGAAGTGGACCAGTTGCCGGAAGTGGTAGTACAACCAATTCTGGTTCGATACCAAACTCAGCCCCAGTTCGCGCACCTCTGCCTGCAGTGTATCAACAACAGTTACTACAGCAACAAGCTCAGTTGCAGCAGTTGAGATTGGCTCAAGCTACCGGACTGTTGAGAAGCCCTCTGGCTTCACAGCCTGTTATACTTCTTGGACAATTAACTCAACTTAGACGCGTTCAACAGCAATTGGCCGCTCAGCAACAACTGTTACAGAAGCAGCCACAGCCAAATACAATGCAAGCTCAACAACTTGCCTTGCAACAGCAACAGATCGGAGCCATGATGCAACAGATTCAACAACAGTTGATACAACAGCAACAATTACAGCAACAGCAGagccaacaacaacaacaacaacaaatggGGTCTAACCAGTTCCCAACTCCGACACAACAAACATTGCTCACAGCCCAACCTCAACAGTTGCAACAGTTGTTGCTACAGCAAcgtaaacaacaacaacaacaacagatgGCCCAGTCAAGTAAACAAACTCAACTTCAGCCTGGTTTGAGGACGACAGAACCTGACACAAATTCAGGAGCAATGGAAGACAGTTCAGTTAACGAAGTTAAATCTGTTTCCCCAAGGACAACTATTGCAAAGGAACCAACATCTTTAGTACAAGTTGTAAACTCTGCCCCAGCCTCTCCTAGTACTGGTAAATCGCGCTTAGGTCAGTGGACACAGAATTCTATACAAACAGAACGCCTTTCCCCCAAACTGCTTGAAAGTGGCGGGAGGGATAGAAATTTACGGCCATCACCGGACACTTCCGAGAAATCCTCGCTTCTCATAACAAGATCAACAAATTCGCCAAATTCGATTCAAACTACATCTAATTCGGCTCCAGTCCACCGCGTGTTGGACCCTGTTTCTAGCAAGTGGGGAATAGACGCGGCCCCAAAGCTTTCGGCAGAACCACCTGAATTTAAGCCTGGCGTGCCATGGCGACCTTACCAACCCAAGGCAACTACGGACATTTCTCAATCAGAACCGTTCGTCAGTACAGCTAAGACAGGCGTCCAGGACTGGCCTGGAAACGCCATAGGTAGTCAAACAGTCTCTTCAACGTTTGTGAACACAAATGCGATCAGTAAGACTGAGGTAACGCCTCTAAAAACTGTTCCAAATTCTCAAAATTATTCTCAGAATAGTTCGTCTGCTATATGGCAAGCACCACAAGCTCCAGTTTCCAGACAGACCGGCATTCCAAGACCTACTCCACTCACTTCAAATATTCGACCACCCCCCGGACTTGGGGATGAGAATAGCTTCCTAAATCTCCCGGATGtgcagagccaatcaagagactCAAACTGGAGCGCCCACAGTGAACCTCAGATGACCAACGCTACCCAATTTGGTATTAGGGCACCAGGCTTTCAACCGTGGCCGACTGAACGACGTGACGCGGGGTGGCCTGGTCCTAGTAGCCAATCGCTGGACACTTTGCCTTCAGTACCGCGGACGAATGAGTTTCGTAACCTGGCTATGTTGGGAGACTCTACAGTGGATGGTGCGGGCATGCGGGCTAAGCCTGAGATGTCGGCTCAGCAATCTCCGTATCATGCTTGGTCAACTTGGCTGGTAATTAGGAATATCAATCAAAGGGTCGACTCTACAGCACTGCGTTCTCTTTGTCAACAACATGGTCCATTACTAACATTCCAGTTAAATCTTCGTTATGGCAACAGTCTAATACGCTACGGACATAAGGAAGAGGCTGCTAAAGCCCATGCTAGTTTGAATGGCTTAAATTTGGCCGGTTCTCGTTTGACTGCTGATTTTGCAACGGATTCAGATATCGGAAGCTTCTTTGAACAGAATTCTGATTGGTCCGCTCCTCAACCAGTCACCACGTGGGCAAATGCTCCAACCTCATTGGCTAAGACTGAACCGAGTACTCAATGGCCTGGATCCAAGCCTCTATTCCCTCCCGGAAATTTCTCGTCAGAGCTTTGGTCCTATAGCCAGGCAGGCGGGTTGGCAAGCGGGGTTTGGTCGGCACCCCCAACCAGCCGACGAGACGGCGAGCAGTCGACGACAGTCGCCGAGAATGGCATCACAAGTCCATCCATGGTTACTTTTTTGCCTCCAGGCCTTTTGAACAGCGGAGAGTCTACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPQ9	Trinucleotide repeat-containing gene 6B protein OS=Homo sapiens OX=9606 GN=TNRC6B PE=1 SV=4
Q8BKI2	Trinucleotide repeat-containing gene 6B protein OS=Mus musculus OX=10090 GN=Tnrc6b PE=1 SV=2
Q9HCJ0	Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens OX=9606 GN=TNRC6C PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008140 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSLDHP00000015560.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052068 all species →	Family	GW182 domain-containing protein	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020 all species →	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0035195 all species →	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213 all species →	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18412	TNRC6, GW182; trinucleotide repeat-containing gene 6 protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.