Gene detail

Detailed information of ENSLDHP00000016295.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4005563.1, E3 ubiquitin- ligase DZIP3 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000017734

ATGCAACTCTTATCCTTTCCTTTTTGTCTAGGCTTCAAAATGACTTCTTCCGCGGAACACATCAACTGGTTAATCGTTGGAGAAATGATTCGCTTCATTCAAGAACCAACTTCCCTTTACGTCGACCATATTGTGAAGAAATTCCATGAAAATTTGTGCCATGATTTCAACACAAATTCCAAGTGCACAAGGGGAGATTGCAAACGCAATACATCAGCTTGTGGCCTTTGTAGATCCTGTAAAAACCAGTGGCAAACGAAACTGGAAACTTTGCATAAAAAGGGCCGCAATCCGTCATGGTCTGGAAACTGTGACGGAACAAAATGGTATGATAATCATTGGGAGGTGGCAAAGTTCTATATGGCAGCACTTGGGAAAAACCGAAACACTGTTATTGATGCTGAATCAACGGATCTCTCTTCACTTCTCAACGTACTGGAATGGATGAAGGACGATGTATTCCCAGGTAAAACTCGAGTAAACGTCAAAGTTGTGATAAAACTTCGTTCGGAAGTTAGAAATACATGGGCACATTCACCGAAACAAGAATTATCAAATCAACAAAAAGAAGATTATTTTAAGATTGCTTTCGACTTCCTGGAAGACCTGAAAAAAGTGTTCCCAAGTAGAAGCACGGAAATCGAACAGTCCATACAAAGACTCAAGAAACTGAAGGCAAACGGAATCAGCGATCCCCTCAAATCCGAGTCACGAATCCTTTTGCTACAAAGCAACATATTAAAAAGGATTGAAATAGAAGTACATTCTTTGAGTGAAGAAATGACAGAACGAAAAAGCCAggaaaagaaattgaaatgTGCGATGAATGAATGCTTGCAAAGGACGAAAGAACTACAAGAGAACACAGACAAGCGATTTGCAGAGATGAAGCCCTTGATTGCAATCCCTGATGATCTACGTGAAATACGAGAAACCCTCAGCAAAATTGACATCGCAAGCTTACAGAATGTATCAAAAGGCGCCAAAGAAGAACCTAAACTAACGAGTTGCTTGCAGGAAAAATTGCCAATGTTCACAGCCCGTGAAGACGAGATTCAAACCATCATTTCTTCCCTTCAAAATGAAAAGACAGGCGTCGTGTCTCTTCATGGTGGACCGGGATTTGGTAAAAGTGCATTGGCAGTCGAGGTGTCACATCGTTTATGTGATAATCAAAACATGGTAGTAATTTTCTCCGATATGAGCACCGCATCCACCACTAATGAAATGATCCGGCGACTCTGCTTTGATGTCGGTATAAATCTTGAAGACGATCCAAAGTCATCACTGATCCGCTGGTTAAAAAACAATGATGATGGAGTGATTATTGTTATGGACGGCATCGACGAGCTCCTTGCACAAAGAAATGATTGGGACGATTTTATTCGCTTGTTGCTAAAGAGTTCTAACCAGCATTGCCAGATCATCACGACCTCCAGAACCGAATACGAAATCCCCGGTATATCAACTGCAAATGTTCCAGTTCGGGAAATGGACGAGAATTCCAGTTTGGCGCTGTTAAAGGCACTCTTGGAAAAATGTAGTCGTGATGTAGACGAAGAATTTTTGCACAAGTTGGCTCAACTCTGTGGCAACATACCCCTCGCTATGTGCATCGCAGCTTCGCGAGTACAAGATTTTAAAGATCATAAAAAACTTCTCGAACACTTGGAGAACAAACCATTAGAGACATTGCAAGACTCAAAAAGTAACCAATGTGTGTACAAGGCTATCGACATGTCTTATGAAAAATTAACTGACGAGGAAAAAAGATCGCTTGTTCGACTTGCAGTATTCAAGGGAAATTTTAGCGAAGAGTCTGTTCAAGCTGTTATCGAAAAAGATGATTTAGAAACCAACAATATCTTGAAAGAACTTGTCACTCGTAGCCTGCTTACGAAATTTAGCGAGGGACGATATTCAATTCACAACTTGATTCGACATTTCCTAAAGAAAGCGAATGAAAAGGAGATAGAAACTGCAAATACCCTAATGGTGGAATACTACCTGAAATTGTGCCACACGTCAACCATAAAAAGTTACTCTAAAGATGGATTTAAGAATGAAAGAGAAATCTTAAAAAGAGAGGCTCACAACATTGAGAACGTCCTGACAATATGTGGCACCGATTCCGGAATTTCGGACGCCTTGGCCAACAGCGAAATTTACAAGTCATCGTGCagatttttttacaataccGTAAAAACTATCGTCTCTGAAACTGTCCTCGAAAATTTCCTACAAGCATGCGCTGATTTGGCCCAAACGAGAAAAGAatggaaaaataaaataaattttgattGTATGTTGGTTGATCATGAAGGCCATAAATCGCTTTGGAAATCTGATgcgtattttaaaaaaatgacagAAACCGAAAAAGAATTCCGAGACCAGCTGAAGAAATTGGAATGTGCGATGAATGAATGCTTGCAAAGGACGGAAGCACTTAAAAAGAACACAGACAAGCAATTTGCAGCTATCGCATCGGAGATGAAGCCCTTAATTGCAATCCCTGATGATCTACGTGAAATACGGGAAACCCTCAGCAAAATTAATGCTGACATCGCAAGCTTACAGAATGTATCAAAAGGCGCCAAAGAAGAACCTAAACTAACGAGTTgcttgcagcaaaaattgccaatGTTCACAGCCCGTGAAGACGAGATTCAAACCATCATTTCTTCCCTTCAAAATGAAAAAACAGGTGTTGTGTCTCTTCATGGTGGACCGGGATTTGGTAAAAGTGCATTGGCAGTCGAGGTGTCACATCGTTTATGTGATGATCATAACATGGTAGTAATTTTCTCCGATATGAGCACCACGTCCACCACTGATGAAATGATCCTGCGACTCTGCCTTGATGTCGGTATAAATCCTGAAAACGATCCAAAGTTATCACTGATCTTGTGGTTAAGAAAGAATGATGATGAAGTGATTATTGTTATGGACGGCATCGACGAGCTCCTTGCACAAAGAAATGAATGGAATGATATTATTCGCTTGTTGCTAAAGAGTTCCAGCCAGATCATCACGACCTCCAGAACTGAATACGAAATTCCCGGTATATCAACTGCAAATGTCCCAGTTCGGGAAATGGACGAGAATTCCAGTTTGGCACTGTTAAAGGCACTGTTGGAAAAATGTAGTCCTGATCTAGACGAAGAATTTTTGCAAAAGTTGGCTCAACTGTGTGGCAACATACCCCTCGCTATGTGCATCGCAGCTTCGCGAGTGCAAGATTTTAAAGATCATAAAAAACTTCTCGAACACTTGGAGAACAAACCATTAGAGACATTGCAAGACTCAAAAAGTAACCAGTTTGTGTACAACGCTATCAACATGTCTTATGAAAAATTAACTGACGAGCAAAAAAGATCGCTTGTTCGACTTGCAGTATTCAAGGGAAATTTTAGCGAAGAGGCTGTTCAAGCTGTTATCGAAAAAGATGATTTAGAAACTAACAATATCTTAAAAGAACTTGTCACTCGTAGCCTGCTTACGAAATTTACCGAGGGACGATATTCAATTCACCACTTGATCCGACATTTCTTAAAGCAAGTAAATGACAAGGAGATAGAAACAGCAAACAACCTAATGGTGGAATACTACCTGAAATTGTGCCACACGTCAACCATAAAAAGTTACTCCAAAGATGGATTTAAGAATGAAGGAGAAATGTTAAAAAGAGAGGCTCACAACATTGAGAACGTCCTGACAATATGTAGCACCGATTCCGGAATTTCGGACGTCTTGGCCAACAGCGAAATTTACAAGTCATCGTGCagatttttttacaataccGTAAAAACTATCGTCTCTGAAACTGTCCTCGAAAATTTCCTACAAGTATGCGCTGATTTGGCTCAAACGAGAAAAGAatggaaaaataaaataaattttgattGTATGTTGGTTGATCATGAAGGCCATAAATCGCTTTGGAAATCTGATGcgtattttcaaaaaatgacaGAAACAGAAAAAGAATTCCGAGAGCATGAGAACGATTTGACAGAAGACGTGGAACTGCAGGCTCATTTGTTTTACCAGCTTGGTCGATGCTTTTTAAATCAATCCAAACTGTACAGAGTTACCGGTGATAGTACTCTTATCCAGCTGGACTACCTGCATTCTTCAGCTTTATACCTATCTAAATCCTTGAAACTGCGAAAAGATTTGACTGAGTCCCCCTTGGCGAAAACCGACGTAATTCTCTCGCTGATTCAGCTTGGAAACTTAAGAAAGAAAATGGCTCACTTACCAAAACATCTACAGGCTGGAAACGAACGTGAAAAATGCAATGAACAAGCAGAAAAATATTACAGAGAAGCAATAAAACTAGCTGAAAACAATTTAGGAGAACATGAGCTAACATCAGCATGTTACAAGGTTCTTGGAGACCTActttttttgaggaaaaaaTTTGAAAGAGCTGTGGAATACTACCAAGCTGCCAGACAGATGCGGGAACAGTTAAATCTTGTTACCAGTAAAGAGTATGCGCTTCTACTCTTAAACAACACTGGACgttgttcaaattttgatacCAGTAAAGAGTATGCGCTTCTACTTTTAAACAATATTGGACTTTGTTTAATATATATGAAGCATTACCCAGAAGCAGGCAGAATATTAGAAGAAGCCCTAAAGCTGGTCAAAGATGGCCCACCGCACTACAAAAAAAAGGTCGACCAATCCTTGCAATTCTTGCAACAACAAATCTGTAAAACGGCACATGCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6L3L0	Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum OX=50514 GN=R1B-23 PE=3 SV=1
Q6L3N7	Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum OX=50514 GN=R1C-3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000367 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF15112 all species →	DUF4559	Domain of unknown function (DUF4559)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR042197 all species →	Homologous_superfamily	Apoptotic protease-activating factors, helical domain	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR027897 all species →	Family	Protein of unknown function DUF4559	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691 all species →	REGULATOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000016295.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.