Gene detail

Detailed information of ENSLDHP00000018901.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: XP_028414852.1, nuclear factor NF-kappa-B p105 subunit-like [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O73630	Nuclear factor NF-kappa-B p100 subunit OS=Xenopus laevis OX=8355 GN=nfkb2 PE=2 SV=1
Q9WTK5	Nuclear factor NF-kappa-B p100 subunit OS=Mus musculus OX=10090 GN=Nfkb2 PE=1 SV=1
Q00653	Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens OX=9606 GN=NFKB2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000740 (this species only)
Transcription factor family	RHD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16179 all species →	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan
PF00554 all species →	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032397 all species →	Domain	Rel homology dimerisation domain	Interproscan
IPR000451 all species →	Family	NF-kappa-B/Dorsal	Interproscan
IPR011539 all species →	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR037059 all species →	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR030492 all species →	Conserved_site	Rel homology domain, conserved site	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24169 all species →	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09254	REL; c-Rel proto-oncogene protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.