Gene detail

Detailed information of ENSLDHP00000021329.1 in Eunicella cavolini

Genomic Location: chr17:161359...169720
NR annotation: CAB4022133.1, methylcrotonoyl- carboxylase beta chain, mitochondrial-like, partial [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000023267

ATGCTCCTGGGAGATTTACAGTTTGGTGAATCGAGTAAGCGAGACGTGCTAGCTTTCCGTAATGGCGAAGTTCTGGAGGAAGCTTCCACCTTGTTTGGAGTTCCGAGTGCGACTCTGGCCAGTCTAATAATTATCAAATCAAAGACTGTTCGGGGTCAAAAGGTGAATATGTCAGCATCTTGTTCAAAGGCGATGTATGAATGTGACCGTATGGCGGTGATTTGTTATGAAACATTAGTCATGTGGCTTGAAGAAAGAATTAATTCCAGATACACTGCCCATTCAAGATTACAGTCTGACTATTCATTGTTGTTACTGGATgcttttggctgggaaaattaTAGTATTTGTTCATTTGAACAACTGTGTATAAACACGGTCAATGAAGTTCTACAGTCTGTGTACAACGCTGTTGTCTTTAGCACATATCAGACGGAATTGGAAAATGAAGATATCTACTTGAATGAAACATGTCGAAAGTTTGATCAACCTGGGGCTGTGCCTTTTCTTCTTAAACCCAAAGGTCTCTTTGATGTTCTACACAGCAACACAGACTCGAACGATCAAAATTTGTTGAAAAAGTCTGACAGTTCATTTAAGAAAGAACCAAGATATATCACGAACAACAATCAAGAATTCTCTGGTTTTTTGATCGAGCATTTTATTGGCGAGGTTTCATATGACATAACTGGGTTTGCAGCACAATCCAAGAACTGGTTAAACAACAATGTTTTGACTTGTTTAAAAGGTTCCAAGAACAAGGTAGTGTCTGTCATGGCGCAAGAACGAATGGCCAGAGAAAATGCGTCGTTAGAGAAAGCCTTATCATCTCCGTCAAGCTCAAAGAAAAGTTCGATGGTTGAAAAAGACTGCCTTAAAACAAATATATTCCTGTCAAATTCTGGAAAGGAGAAAAAGAAGCATGCTTCAATAAAGAGTTCCAATCCAGCTGTTTTAACGatGTCGTTAACATCACTTCTCAACAGAATGTCCTCGTCAAAAGTTTACTTCATCAGATGTATTAACAGTAACCTACGTATGCAGCCTGGCGTCTTTGATCGTGAGAGAGTATTACGTCAGGTTCAATGGAGTAATCTTTATGGAACTGTCAAGACCCGACTGCCTAGTCTCAAGTCGTGTTTTTTATTGCTTGAATTTATCAGCAGATACAGATTATTATTCTTCCATCTATCTCGTCCAGCACCGCCCTCACCTGAACTGTGCCACTCTGTGTTGAGCAAGAGATTTCATGAGTCAGAGTACAAAGTTGGAAAGACGAAGGTTTTTCTATCAACAAGTCTCGTCTTGGAATTGGACAAGAAGCTAGAAAAGACATTACTTCAAGTTATTCTCATTCAAAAGATATTCCGCGGTATGCTTGGGAGAAAACAATATCAAGCCATGATCAAGATAAAGAATCAATACGATTATCAACGCTCATTATTTTTCTCTCGGATCACTTCTGgcatatcaaaatttcatgatCATCTATCACTTCAAATATCTGAAGACCAGAGACGACTGAAGCAGAATAAATTAAAGGAAGAACTGAAGAAAACTGAAGCAAATGAAAATAATCCTGCAGAAAACAAGCCAACAAGTCCTGCAAGTCCAGGTTTGCGCGTGTCGTATGCGTGGGGTGATGAATTGATTATTGATGAAACCTCCGAAGTATTAACTTGGTGCAAGATTGTGTGTTTTCAACGCACGAAGCAGTTGGCAGTATTTAATGTGAAGGATCCCAAAGTTGTGATAGATGGCACTAATCATAGTTTCACCACAGAAAGAATTGGTTTCAATTCATTTCCAACGCCAAGTCATGATAAACAAATGAAGAAAGTTAAAGCTTGTATTGGAAGGGGTGTTGAGCTGTACCTTGCAAACGACGGAAGTTTAATTGCAGTCAGGTTATGCAAAAACTCCATATTTGTCAAGGGGCATTTCTGTGAAGACAAGTTGCTGAAAACTCTGGGGGAGCTCTCCAAGAATGATGAGACAAAGCTGTTCAATTACAGGAGTTTTATCGAAAAAATAAACTACGAATGCCACCCTGCAAAATTGGCCTTAGACAGTGAGGACAAGTGTCTAGCAATGTGTGTTGTTCATCTTTGTTTTGTTAAGAACAGTGACAGTGACGATGGCGCTCCGTGTTGGGTTGAGGTTGTTTTAACTCGGGCTGTACAATATGTGAAACATGCGGTTTCACTCTCAATGCAACGGAGAAGAGAAGTACAGGAGAAATATCATTTTCAACAACCGCCAGCGCTCAGAATTGATTCAAAAATGGAGTCAACTTCAGCAAAAATTCTCCAACTAATCCGACCAAGTCGTTATATTGAGACGGTGAAATTTAAACGCAAGGCTTGGGCTCGAAAGAGAGTAGTGAGCAATCCTTTTCTGTACGGAGAAAGCTCGTTGAGTGAGGATGATAAAAATGAGAGTGTTTCTTCCCCTGACGGCAGTTTTGCCGAGGGAACAGTGTTTGAATCTAATGAAGACATTTCCCCTGGAAATGGAGGGCAAGAGGTGTATGAAAATGTCAACAATGTGCAAGATAAAGGGCAAAGGCACAGAAGTCAAAGTGCATTCTTACCAGACAACAGCTATCAAGAACAGCCAGTATTTAAATCCACTCCGAAGATTTCTACTTTTCCGAAAGGTggagatttttatgaaaatgtaAAAGTGGAGACTGTGGAAGAGAAATGGCAAGACGTCTTTAAAACATCACAAGTGGAAACGCAAAGCGAAGATGTATTTGATGGTTTGAAAGAAGATGGTAGCAGAAACGTGAGTGTAGAAATTCATAGTTCGTCAGAAAATGGCGGTCAAGATTATTATGAAAACGTAATCATAAAGAAAGATATCAGAAATACAGGAGGTGAGAAGTTGTCTGAAGCAACCGAGAAAGAGGAGCAGAGAGATGGCGTGTCTGAGCATCAGAGTGAAAGAAAAGTAATTCAGGTTCAATCCAATGGCCATGAACAAGAATGTTATGAAAACGTCAGAGAACATTTCAAGAATGTTGAAGAGAAATGGCAAAACATCTTTGAAATACCTCAGAAAGATAAACACAATGACGATGTGTCGGATTGCGAAGAAAACAGACGACTGAATGAAGCTGATTTTCAAAGCAGCACGAATCTGTCATTTCCAAATCATTCACTAACCGGTGTGAGTCATGCATCTTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HD67	Unconventional myosin-X OS=Homo sapiens OX=9606 GN=MYO10 PE=1 SV=3
D3ZJP6	Unconventional myosin-X OS=Rattus norvegicus OX=10116 GN=Myo10 PE=1 SV=1
F8VQB6	Unconventional myosin-X OS=Mus musculus OX=10090 GN=Myo10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000785 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03166 all species →	MH2	MH2 domain	Family	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019471 all species →	Domain	Interferon regulatory factor-3	Interproscan
IPR052409 all species →	Family	Myosin-III family with kinase activity	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR001132 all species →	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46256 all species →	AGAP011099-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0030832 all species →	Biological Process	regulation of actin filament length	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000021329.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →