Gene detail

Detailed information of ENSLDHP00000021884.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4002923.1, Stress-induced-phospho 1 [Paramuricea clavata]
Species abbreviation ECAVO · all data for this species · gene families

Sequence

CDS

ENSLDHT00000023822

TTATATAATGAACATAACATctctcactcTACCAATTCTAGTATATCGGACGAAGAAAGAAGATGGGCTGTGGTTGGTGTTTGTCTTACCAAAGTCCTTACCCCAGCTTTACGAAAAATCCTTGCATCCGAATTACAGATCTGGTATCAGCAGTTGTGTCAACCACCAGATGAAATCGACAAGCAAGTTTTTCCCAAACATAAAAAGAAACTACCGCCTTCTAAATGCCCACTGAAATATGAgaacatcaacaacaacaatgtCCACAAATCTCCCCGTGCTTATGACTATGCAGTTACAGATCCTTTGTCCTTGGCAAAGTTATTCGTGCAACCATTTATGGCGATGTTTACAGGTTTCGACCAAACAATGGATATGTCTGCAGTTTTGACAGTTATGTGTGAAGCAGATCCATTTGTATCTTCTGGTGCTGCAGTTGATGCAAAGACAATAAGGTCAGATGTCAGAAACAAGTGGGCCCATTCTGATGAAAACACTCTTTGTTATGATCTGGATGGCTGGAGGGTCAAAGgCTTGGAGTTGTGTTTTGGTCAGACTGTTGATCCTGCACTGCTAAAGTTGGTAACGAAAGAGGTAGCAGAGCTTCATACATCTGTTCAAACCTGGAAACTTGAAAGTGACACACAGATGAATACATTGCTCGAGAAACTTGGTGACATAGAATCAAACTTTGACAAAGAGTTACGTGAGCTGACGCTGAAAATTGAAAGATGTGAGAAGCGTGGAGTGGAGAACTCGAAGGAACTAAAACTTCTCGACAAAAAATTCAACACGGAACTCTCGAAATATCATGGAAAGCAAGAAGAAAAGATTCCTTATATTTTTGATGCTCCAGACAGAAACCAATATTTCTCCGGACGAACTCAAGAACTTCAAGATCTTGAACGCATTCTAAAACCTGACGATACTGGACTGGGAGGAAAAGTGTGTACAGCAGCGGTCTGCGGTATGGGAGGTGTTGGCAAAACAAGTCTTGTCACTGAGTATGCTCACAGGATGAAGAAGCATTACCAAGGTGGTGTTTACTGGTTCTCAGCAGAAGATGATGGGTTTCTTGAACAGTCTGTTAATGACACTGCTTTGAAACTTGGTGCCTTACTTGGGATTTTTGATTTAACATTGACAAATACCCTCTTAAGAATTGGCCAGAAAAGTAAACCATGTTTAATCGTCTTAGATTGCTTAGACCAACTGAATCTTTCTCCTAATGTGTTGAAGTTTCTTTCCCTCGTTTCAAGACAAAGTGTCTCAGCATCGGTTGTTGTGATGACCAGAAGAAATGAAAGTAAGCTTGTTGACGAGATTTCAAGTCTTCGTAAAGATCGTTGTCTTATTCTGAAATGTCTCGAAGTAGAAGAGGCGAAACAGTTCATGTTTTCCAGGACAGGGTTAACTCGTGACGACATTGCAGACGGTGTAGCTGAAAGTCTAGTTAATGAGCTGGGAGGATTGCCACTCGCTCTGGAGCAAGCAGGAGCTTGTATTAAAGCACTTGGTTGCAGCCTGTCTGATTACCTTGAGCAATTTCAAACTGAACGCTTGAAACTGTTGGAAAGTCAGAAAGCAAAACCAGCATCACTCTATGAATCACCTCAACGCCTGGCCGTTCACACGACATGGTTGTTAAATATCAAACATATCAAAGAGAGCCGGCACGGTATGTATGCCGTCCGGCTTATGAACGCCTTTGCATTCCTTAATCCAAACGAGATCGAAGAAGAATTAGTCAATGTTGGTGAACGTCCAATTGAAGACAAAGCATTTCGTGACTGCGTGAGCTCGCCTCTCGGGAGACGTCAAGTTGTTAAATTGCTGACTGATTTTTCGCTTTTCATGTATGTCCATGCGCACTCTGTCAGTACACATCGCTTGGTACAAGAACTAGTCCAGGAAAATGTTGACCCTGAGGAGAAAGCTAAGAGTTTTGTTGATGCAGTTCGTTTCCTTTCTTTCGCATTTTCTAAATGCACATCTCCAAAACCTCTTCTGGGTAATGTTGGCATTGAAGAACGCTTGAAAGCCTATGATTTGCCTAATAACCATTCTCAATATTATATGTGGTCTAAGCTTTGCTTTCACGGCTTTCGTCTCCGACAGAATATAGAGAAATTACTAGCAAATCCTGATCCGAAATGTTTAGATTCCCTTTTCGTTTTCGAAACAGCCAAAGTTCTTTATGAATGCGTTGTCCACTTAAGCGCTAATCAGAAACAACAAGAGGCTAAACGCACTTTAAATTTTGCTTACCGAATACTAGATTGGGTTCCTGTAGACGAGTACGACACAATACAAAAAAGTCTTTCCAATAACTCTCTGTTTCCTTCGCATGTTATTCCCTTACCAAAGTGGCTTCAGATCgctatcaaaaaatgttgtttaccTCCTCTGAGATCCCTTGAACGTCTTGATGAAAAGCCCAGGGTGGAGGCCGAGGTCTCTGAGTTGCGTGACTTAGAGCAGAACATTGAAAAGCTTAGACTGGACGGGAATAAGAAATTTAAGGATGGTCTTTATAAAGAAGCAACAGATGCGTATTCTGCTGCCATAGATATGAGTAGAGGTACAACTGTCTTCAACGCTTTATTGTTGACCAACCGTGCTTCAGTGTATATCAAGCTAAACCGGCTTGATGACGCTTTGAAAGatgcaaatgaatatatatcaCGGTTCCCACATTGTTGGAAGGGCTATGCTAGAAAGGCTTTGGCACTTGATGAGAAAATCAGTGCTGAAATAGCCGCAGCACTAgcttattattatttttacctAAAAGATGGTAGATGTATTTTTTCAGAATATAAGCCATTCATAGGAGCCTTCCCCGGCCTAAAGGAGCGTACATCCATATGTCATACTGTAGATCAGTTAATGGCGGCATTGGTCCCACTCAGCTCACCAGAATGCCTGCGGATTATTATTTTGGGGTCTAAAGAGTATATTATAAACTTGGTAACGTTCGTCCCTTTAATGTCTGTGAATAACTGTATTATGGTTGGTGCAAAACCGTATCCATCTGTTAGTCTGAAACTTGAAGGTAACCTAGTCATATCGTTGTTAGGAAAATATATGTTTGCAAATCTTTCTTTCGCTCTTATTGATAAAAGTCAAATCGATGCTCTTAAAGGCTCTGCGGTTAAGTTACTTAACTGTAGTTTTACTTCCAATAATGACGTTTTAGCAGGTGTTGCATCTAGCGGTGTGCTTAACGCAGAAGGATGTAACTTTACACACTGCAAAGCTGGTGGATTGCTGTGTGTGGGACCTGGTAAGATGGTTGTTGATAAGTGCACGTTTTCAGGTAATGTGAAAGCTGGCCTAGAAGTGCGCGAAAATGGAATACTGACAGTGAGAAACAGTTGCATGTATAACAACAGTAAGGATGGGTTAATGATAGGACCCAAGACGGCAGAATGTAACACATATGATTGTCAAATTTATCATAATGCTCGCGAGGGAATTGCAGTGCTGGATGAATCGAAATGCATCACCCTCATGCGAAATTATATTTTTGGAAATGATGAGAGTGGTATATTCGTGAGGAATTCGGAAGTCGATATGAGAGAGAACAAGTTTTTTGACAATGGAGCTTGGGGTATTTGGTCGCAGAGTAACTCTTTCTGTTTAGTGTCAATGAATGAAGTTTTCCGTAACAAACGTGGAGGAATTCGTGTTGGAAAACGACGTTCCGGAAGAAAATTCCCTCCCTCGGTTGTCAAATTGAACAGAGTCCATGACAATTTTGGCCCGGGAGTTGTTGATACCATTAACAACTTCGAAGACCTTCGTCTTTTTGGGCCCGATACAGATGTGTCGAAAACGGGTGGTGATTATAAATCGGCAAAATACGATGGGAATGTTGAGTACAATAACGAGGAAACAATTATCGTTAACAAATTGACATTTTCTTCGCCTTGGTGTTCTGGGTGCAACGGAAAGTGTGACGATCTTAAACTGTGTGGGAAGTGCTTCACTGCTCAGTATTGCAACAGAGATTGTCAAAATAAACATTGGTCAAAACACAAGAAATTGTGCAAGGTTTTACGCGAGAAATCCAGCTTCTTGATCACTTCTGCGACGAGGAATTATTTTGATGTTAATGTTCATGCGAAAGGTCTTGATGAGGTTGGTCCAAACTACAGCCCTCCTCCATTACGAAATGGTAAAAGGTTCATTGTTAAGCTCCAAACCATCTTTGAATCTATTGTTTTTGGTAAGCTGCACTCCATTGTTATTTACGATCGCAGTCTTGATGTTTACGAAGAGTTTGAAGATCAATTTATTGACCATCTTGTACAAGAGTTTGGCGTCCTTTGTCAAAGGAAATATCAAGAGAAAAAGATTTTCCTTTACTGCGTGTTTGAAGAAAATGGAAAGCTACGGCTGTTCATCAACGATTTCGCTGACTTTCAGAGATGGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000290 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12646	RIGI, DDX58; ATP-dependent RNA helicase DDX58	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.