Gene detail

Detailed information of ENSLDHP00000023977.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4021157.1, RNA-directed DNA polymerase from transposon BS, partial [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000025915

ATGACTGATTTGGAGGAGCTGTCAGATTCGTCAAATTTATCAGAGGAAAATGTAGAAGAAGATCCAATTGTGGTAGCAGAAAATGCTGGTGCAACATTTCGTACACCAGCAGGCGCAGCCATTGCACGTAAGCGAAAGCTTCCTACCAACAAAGGCAAGTATAAGCAGAGAGGAAGTAAAACACTTGTTGCTACAAGTGCCTGGGACCGTTTGAAAGAGTTCCCGAACAATCATTTTGCTGTAGTTTCACAGAAATTGCGGTGTAACGCTTGCAATGAAATGATTTCTAAGAAGAAAAGTTCTATCGTAAAGCATGTCGAATCGAAGAAGCACAAGAAAGGCTTGGCTGATATTGCAAAGAACAAAACCGAAAACCAGACGATAATGGCATGTCCTGAGAAGAGGAACAATAGAGAGAATAACTCTGGATCAACTTTACCCGCTGAGATGCAACTTTTCCGTTTCGAAGTCGTCGAATCGTTTCTCTCGAGCGGAATACCACTGGCGAAAGTAGATGCACTTCGACCAATGTTAGAGAAGCGTGGCCACCGATTAACAAGCCGTTCCCACATGAGCGAGCTTATCCCAGCGGTACTTGAGAAAGAGAAGAACAAACTCAAGGACGAACTCCAAGGTGTCAAGCAAGTTTCAGTAATTTTTTATGGTACTGCAAGATTGGGAGAAGCGCTTGCTATCATTATTCGCTATGTGCAAGACAACTTTAAACCAACTCAGCGCCTCGTACGTTTAGAAATACTTGCGAAGGCCAGGAAAGGTGGAGAGTTGGCTCAGAGACTGATGTCTTGCCTGGCAGTGGAGTACAAGTTCGGCCCAAGCGTGGTCATTGGAGCAATGAGAGATGGCGCGTCTGTCAATGGAGCTGCCTTACGCCAGCTGAATTTCTTTTATCCAGAGCTCTTGGATATTGTATGTTTCTCTCACACCATTGACAATGTTGGAAATCATTTTGAATTTCAAGTCCTAGATTTGTTTGTTCGCTATTGGATTGGGATGTTCTCTCATAGTTACACTGCACGCCTTGTATGGAGAGAGAAAACTGGACAGTCCATTCAAACCTACAGTGAAACACGTTGGTGGAGCAAGTGGGAAGTGCTCAACCAAGTGCTAAACTGTTTTGGTTTCGTTGAGCCCTTTCTTCGGGAGAATGAGGAAATTTGCCCTTCCAATCGCGGGCATCTGCTGGAGATACTCGACAATCCTCAGAAATTTCAGGACTTACGCTTGGAGCTCGCCGCGCTTATTGATGCAGGGGTGCATTTTGTAAATGCCACCTACTACTTAGAAGGAGATGGACCGCTCATATTCACTTGTTATGAGCGGCTTTCGGCTGTTTCCCATGCAGTAGCAGTTGATCACTATCCCAATACCTCAGCTGTTGCCCGGCAAATAGCTGGTGGTGATGCTGCACTCTGCAGCCAATTAATTTCACAAGCAAAAGCTTGTATCAAGCCTGGCCTACAGTTCTACCAGCAAAAATTTAGTGGTCAGTTCCATGGTATAGTGCGAGCATTTAAAGCTGCACGTCTCTGCTGCCCTGTGCAGGTTCAAAGCCTAGATCCTACAGCCGAGTCTTTGGAAGAATTCAGAAATTTTTGCTTTATTAACGATGACACGAAGATAGCAAATCTGGCAGAAGAGCTTCCCGCATATCTTGCAGCGGCTGATGGTGTCACAGTCACTTGTGAGGAAGACAAGGTTACTTGGTGGGCGGCCCATGCAGATACCCTCCCACATTGGTCTTCACTGGTTAAGACGCTGTTGTTGATTCAGCCAAGTTCTGCTTCTGCCGAAAGGGCCTTCAGTGTCTTAGCTAATGCATTTAATGCGCAACAAGACAGGACCCTTGAAGACTATCTTGAAGCGTGCGTTATGCTCCAGTACAATAACGACAAGAGAttTCTTGTTAATTACAAGAAATTCATCCGAGCGTGCAAAAATTGTATAAATCTCTTGATTAACGTAATATGTACGGGCAACTTTTTGAATTTTAGTAGCAACTTTTTTCTATTTCGGGAAACTTTCGAGCAACTTTTATCGAGCAACTTTTTGGGATTTTACGAGCACAATCGGGCCATGCCTATATACTTTACTGTATAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000280 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052717 all species →	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46169 all species →	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23209	THAP9; DNA transposase THAP9	EC:2.7.7.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.