Gene detail

Detailed information of ENSLDHP00000026675.1 in Eunicella cavolini

Genomic Location: chr3:46553070...46561522
NR annotation: CAB3982290.1, polycomb complex BMI-1-A-like, partial [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T3E6	Polycomb complex protein BMI-1-B OS=Danio rerio OX=7955 GN=bmi1b PE=2 SV=1
Q32KX7	Polycomb complex protein BMI-1 OS=Bos taurus OX=9913 GN=BMI1 PE=2 SV=1
Q5SDR3	Polycomb complex protein BMI-1 OS=Gallus gallus OX=9031 GN=BMI1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000417 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR032443 all species →	Domain	RAWUL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10825 all species →	RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan
GO:1990841 all species →	Molecular Function	promoter-specific chromatin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11488	PCGF3; polycomb group RING finger protein 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.