Gene detail

Detailed information of ENSLDHP00000027309.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: XP_028403859.1, mucin-2-like isoform X4 [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000029561

ATGTGTACAGCCATTGCTGCTTATGCCAGGGAATGTAATCGACATGGTGTACATATCAGATGGAGGTCACAAGACCTTTGTGCTGTGCAGTGTGAAGGAGGAATGATCTACAAGTCATGTGGTCCAGCATGTGCAAACACGTGCTCAAGTTCTTGCGATCAAAATTCAGTTTGCCCCGTGGCCTGTGTAGAAGGTTGCCACTGCCCTGAAGGCACAGTCGAACACAATGGACAATGCATACCTCAGGAAGACTGCCCTTGCGTTGTTGATGGAATCTGGTATAATACTGGTGAATTTGTCATTAAGAATTGTCAGAGATGCGTCTGCAATAGTGGTTGCCTAAGTTGTACTGGACCAACATGCAAGCCACCAGGTCCTACTACACCAAGTACAACAACTCCAGCTAGTACAACAGCAAGTACAACTGCCTCAACAGCTAGTTCAACACCAAGTACAACTGCCTCAACAGCTAGTACAACACCAAGTACAACTGCCTCAACAACTACAGCTAGTACAACACCAAGTACAACTGCCTCAACAGCTAGTACAACACCAAGTACAACTGCCTCAACAGCTAGTACAACCGAAAGTACAACTGCCTCAACAGCTGGTACAACACCAAGTACAACTGCTTCAACAACTACAGCTAGTACAACACCAAGTACAACTGCCTCAACAGCTAGTACAACCGAAAGTACAACTGCCTCAACAACTACAGCTAGTACAACACCAAGTACAACTGCCTCAACGACTACAGCTACACCTACACCATGTTCGATCAAATGCGCGCCAAACTTTCTCTGTCGTCGCAACTGCATGTGCATTCCAGAAGAATGGGTTTGTGATGGCAATGATGATTGTGGTGATGGGTCAGATGAAATGGCAGGCTGTACTACAACAAGGCCAATCACCACGACAACAAGGCCAATCACTACAACACCTTCAATTACGACGCCTCCTATTTGTCTCAACGGCATGGTCCACACAGATTGTCGCCCAAAGTGTATTTCCTCGTGTCAATATATGGACGCTTGCCCATCCAGCGATTACCAACCTCCCTATAACCCTGACTTATGCCAACCAGGGTGCGTTTGTCCCAGTAATACCGTCTATAATGGAAGTCATTGCGTTCGCCCAGTGGAATGTCCTTGCAAGCACAACGGTTCCTACATTGAACCATTGAAATCCTGGGCAAGTGGATGTGATGTATGTTCATGCTGGAATAACAATGTCACTTGTGAGCCCAAACCTTGCCCAACTATTGGAAATTGTTTACCACCACTATTTACAGTTGTGGTCGAAAATTGCTGCCCCAAATGCATGTATGTAATAACATCTACACCTACGTCAGGGTGTCCGGCAAATGAATATGTGTGCTCGAGTGGGAAATGCATTCCGAAGAATTGGTTGTGTGACAAAGAAACAGATTGTCCTAGTGGCGAAGATGAACTTAACTGTACAAATGTTACTCCTACATGTCAAAGTTCTCTTGGAGTTGAACAAAAAGAAATCACTCCCGACGAGAACTTCGATGCATCATCAACGGACTTGTCCTGGAGACCGAGCGAAGGACGTCTGAACAACAAAAGTTCTGGAATATGGTGTGCGCGGGCTGGTGATATGAATCCTTGGTTAAGCGTGAAATTGGTGGAAACTGCAGAGGTAACACGTATTGCTATTCAAGGATCGCCGAAAATTTCCGTAAGGCTGGTGAAAAAGTTCATGATAAGCCGCAGTTGGGATGGCGTGAACTGGGTTGTTTATCAAGAAAATGGTGAAGATCATATCTTCAATGGAAATGTTTTGGCCAGCGTAacggtatataataaaatacgttATCCATTTGTGGCTCGTTATGTGAGGATTTGGCCAGTTGAATGGGGATCACATGCTTGTTTACGACTAGCTTTGTTTGGATGTGGGCACGGAATGACTACAACGCCAACGCCAACGCCAACTCCAACAGCGACACCTACAACTCCAACGTGTGACGAGTTTCAATGTGCTAATGGAAAGTGTGTCAACCAAAAGTACGTCTGTGATAAGTATAACGACTGTGGTGACAATTCTGATGAAAAAAATTGCCCACCCTGTCGTTCCAATCAGTTTCATTGTAAGAATGACAAATGTATCAATAAAAGATTCGTGTGCGATGGAGAAGATGACTGTGGAGATAATTCCGATGAATACCAGAACTGTACATGTTTTGAGCTTACCTGTAAAAGTTACAGCAGTGCTAATAAGACTTGTATACGCTACAGGCAACGTTGTGACGGCCACGAAGACTGCCCACAAGGAGATGACGAAAAAAATTGTCCTACTACACCACCACCTTCATGTCAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2PC93	SCO-spondin OS=Gallus gallus OX=9031 GN=SSPO PE=2 SV=1
A2VEC9	SCO-spondin OS=Homo sapiens OX=9606 GN=SSPOP PE=2 SV=2
P98167	SCO-spondin OS=Bos taurus OX=9913 GN=SSPO PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000873 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01826 all species →	TIL	Trypsin Inhibitor like cysteine rich domain	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036084 all species →	Homologous_superfamily	Serine protease inhibitor-like superfamily	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR002919 all species →	Domain	Trypsin Inhibitor-like, cysteine rich domain	Interproscan
IPR050685 all species →	Family	Low-density lipoprotein receptor	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000027309.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.