Genomic Location: chr3:11684952...11704587
NR annotation: XP_028404568.1, phenylalanine--tRNA ligase alpha subunit-like [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000031155 |
| Protein |
| ENSLDHP00000028763.1 |
| UniProt accession | Description |
|---|---|
| Q1JPX3 | Phenylalanine--tRNA ligase alpha subunit OS=Danio rerio OX=7955 GN=farsa PE=2 SV=2 |
| Q6AZG6 | Phenylalanine--tRNA ligase alpha subunit A OS=Xenopus laevis OX=8355 GN=farsa-a PE=2 SV=1 |
| Q7SYV0 | Phenylalanine--tRNA ligase alpha subunit B OS=Xenopus laevis OX=8355 GN=farsa-b PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004006 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18553 all species → | PheRS_DBD3 | PheRS DNA binding domain 3 | Domain | Interproscan |
| PF18552 all species → | PheRS_DBD1 | PheRS DNA binding domain 1 | Domain | Interproscan |
| PF01409 all species → | tRNA-synt_2d | tRNA synthetases class II core domain (F) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR040725 all species → | Domain | PheRS, DNA binding domain 3 | Interproscan |
| IPR006195 all species → | Domain | Aminoacyl-tRNA synthetase, class II | Interproscan |
| IPR040724 all species → | Domain | PheRS, DNA binding domain 1 | Interproscan |
| IPR004529 all species → | Family | Phenylalanyl-tRNA synthetase, class IIc, alpha subunit | Interproscan |
| IPR002319 all species → | Domain | Phenylalanyl-tRNA synthetase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11538 all species → | PHENYLALANYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004826 all species → | Molecular Function | phenylalanine-tRNA ligase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006432 all species → | Biological Process | phenylalanyl-tRNA aminoacylation | Interproscan |
| GO:0009328 all species → | Cellular Component | phenylalanine-tRNA ligase complex | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0043039 all species → | Biological Process | tRNA aminoacylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01889 | FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain | EC:6.1.1.20 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
