Genomic Location: chr3:54495436...54502795
NR annotation: XP_028391142.1, protein CLP1 homolog isoform X2 [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families
| CDS |
| ENSLDHT00000033995 |
| Protein |
| ENSLDHP00000031259.1 |
| UniProt accession | Description |
|---|---|
| A7RG82 | Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v1g236308 PE=3 SV=1 |
| A2VE01 | Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Bos taurus OX=9913 GN=CLP1 PE=2 SV=1 |
| Q92989 | Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens OX=9606 GN=CLP1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004259 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06807 all species → | Clp1 | Pre-mRNA cleavage complex II protein Clp1 | Family | Interproscan |
| PF16575 all species → | CLP1_P | mRNA cleavage and polyadenylation factor CLP1 P-loop | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038238 all species → | Homologous_superfamily | Clp1, C-terminal domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR045116 all species → | Family | Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3 | Interproscan |
| IPR010655 all species → | Domain | Pre-mRNA cleavage complex subunit Clp1, C-terminal | Interproscan |
| IPR032319 all species → | Domain | Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12755 all species → | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0006388 all species → | Biological Process | tRNA splicing, via endonucleolytic cleavage and ligation | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0051731 all species → | Molecular Function | polynucleotide 5'-hydroxyl-kinase activity | Interproscan |
| GO:0031124 all species → | Biological Process | mRNA 3'-end processing | Interproscan |
ENSLDHP00000031259.1.Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
