Gene detail

Detailed information of ENSLDHP00000032501.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB4034983.1, probable methyltransferase TARBP1 [Paramuricea clavata]
Species abbreviation ECAVO · all data for this species · gene families

Sequence

CDS

ENSLDHT00000035280

ATGGAAGAAATTGTTGTTTATGCTGTCCTTGACGTGCTTGGCGCTGTAGAAAGTGAAGGTCTTCTTTTCAAAATCACTGGTCGAATTTTGCCAAGACTATTGTTAATTAGGCAGGAAACATTATATCAAAACACAAAGATATCAAGACTCCAAGAACAAACAGGAAAGCCATGTTTGTCGGGTTTCGTCAGTTCCTACGCCATTATATCCTCTCTTGCTGACCTGTATTTTAAAGAAAGTCGCGAAACGGTGATTAAAATTCACCACGATCCTGTCTTCTGGACCATGGTTCAAGCTGGTTTGGTCAACATAGATTCATTAGTTAGAAAACGAAGTTTGTACTTATTTCAAAGGGTGGTTGAGATGTGTAAAGAACAAGGTCAAGTTGAGAAAGTATACATGGAGAAAACATCGCCAGTATTTTGGTGGGATCCCGACAGCGCTGACGAAATTCTAGATATCTGGCAACAATACGTCTTTTTCTTGGAAATTTTGGAAGAAAAACAGCTTCATGTTATTCAGCCAGTCCTTCCACGTATTGAAGAACTTATTAATACAACGAAGAAAACAAAAGATGTTTCTTTTCCTTTATTGCACGTTTCATGGCTGTCTGTGATTGTTCATAGAGCTGCAATACATGAAAACAGATTCATAAAGAAATGGGGTATCATGGTCTTACTGACATTGAATCTTGACGAAGTACCATTCCTAGAAAATGTAGTGACaagaaatttcacatgtgatacGTTCATCATGTTACTCAAAGAGCCAACGTTGTATGCCAAGAACCACGGCGAAAGTAAAGCTGAACCAAGTGCATTAACCAAACAATTGttgaaatttttcaataaatgttttcAAGCTCTGAATGATGAAGAGAAAACTGGATTTTTCAAACAAGTATTTACTTCTATTTCTCGTTATAACATTAGCCATGTTCCACTTACCTTTATTTCTCAGAGTCTTTCCAATGTACCACGATGTGCAATATTTGGTAGCGAACTACTGAACAGTGTAAGGAGCATTGTTTCAAACATGAACAGTCATTCGGTTATGTTACGTGGGGTAGTAAAGACGTTTCTCTTGAGAATATTTATGAATTTTGTTCAACCTACGAGTGTGAGTGTTCATGAAGTATTGGTGTTTCTTGGTTCGTTTGTGAAAGAAGAATCACTGTGTAGAGGGACGCAACTTTGGAATGAGGTTGTAGCGTGGTTGTCTGAAAGTCACGGTGTTTTTCAGAGAGAAACAAAAGATTTGTTTACAAAgttcaaatttttttatttttccgGTTTCTTTTCTATAGGTAGTAGGGAAACTGCACTACAATTGGCTAAGTTTCTTCTCTTATGTTACGACTGTTCTGCTATAACCAAGAATGAAATGAACCACCTTTTTGATATCATTTTTGTAACCATAAGTAAAGCTCATTCGAATGCCTATCATCCTGTTACCAGTTGTTGGAAGGCAGTTGAACTGCTTAATGGACTGTGTCACGAGTTGTTGGGAGAAGGTAAACTGCATACAGTTGCTAATGACCCAATAGTTACTCTTATGAACAACTTACATGACGTCTTCGATGATCTTACACAGACCCTTGTTCGAACTATTGGTCATGAAGACGAATTTTCTAGTTTCCATGGTTACAATGCTTACTTCGCCATGTTGGACAAAGTAAAATCTTTGTGGTTGACTCACAAATTTCCTGACAATGTACACCTAAAGTTTCAGACATTACTCAACAAGCTTGCTGACTTTGGACTTTCTCTTTGGAATACCGACACACAGTGTATGACAGTGAAACGTTGGTTGCACTTTCTGGTTACTTTGAACAGTCTGCGTTTTCCGAATGAAGGAAAGGGTCACGAGGGAACTTACTTGAAGGAGGCAAGCTGGCGTATTATTGCTGAGGACATCATTACTACGAAGTGGCGCTGTGTTAATATAGCAATCAGAGAAAACGATAGTAAGATGATTTCGGATAGTTTTTCATCCGATACACTTGCCCGAAGTTCATGTAGTGACATCGTGGAAGCATGTGTTGAAGCTTTGTCTTTGACATCAGGACCAGCGTGTTATCCTTGTTTAGAGACATTACGGCTTTGTTTACCTAACTTAATACAAGCTGGAGACGAAAACACGACAATTTTGCTGTTAAAAACTGCTTGGAACGTGCTCAACGAAATCCGAACTCGCTATAGTGGTTACTTTTGGCCAGCTTTCGATTGTGTAGTTAGAATTGTTTTCGCACCAGAATTGTTTGCTCTTCAAGCCGATAGTCTATTGGTGTCATATGTAAGAAAATACTGGGAGTCCTTACTGAAGATTTCTGATGATCAGACTGGTTTAGTAAGAGTGGCTGTTGCTCACCTATGTAAAGTTTTTTCCAATACATACCGGTCACAGTCAGTTAACGTAATGAGTTTGGATTACCACGTCGATATTATTGCTGATATTTGCTTATTTGGTCCAGTTCATAAGAAAGATCAGAGGCTTTTGCTTGACACCGCAGCTTACGTGAAATGTTTAGGCGAAGAATCTGGGATTgttagccttacaaaatttaaGGAATGTGAATGCGAGTCATCACGTACTCGCGTTGATCTTCTTGCGTTTTTGCTCAGTTTGGATTACAACAGTCAAATCTGCTCTTTGTTTATTATTAAACTTATAAGAGTCCTGTTGGAAAGAAATAGAATGCTTTCAGAGATCAAGGCTAGTCGCTTTCTGAATAGTGAAAATCATCGCAGAAAGCAAAGACTATGGCAAATCATCCTTATTCTGGTCTCACGAATTACAGATGATAAATTTGCATTGGAATTTTCTAACAGCGTCCGGAAAGCATTGGAGGGAGATAATCAAACATCCGTACGGTTTTTTATGGAGTGGAGCTTGGTGAGACTGTTTTCTAGTCATATTCATCTTCTTCAGCCAGTGTGGAAAGAAATGGAGAATCTTTACAAAGCTCGGCTTGGTTACGTTGCGTCATTAATCTCCATTGTAACACACGTATTTCTCACTATGAACAAACCAGAGTCTCAGATGGAGTATCTTCAGCGATTGATACCAGCCATTGTTCCGTGTGCATTTCTAAACCATTCTCAAATCCGTGCTTACATTTTAGCAGCGTTACAATTAATCTCCGACACATCCACCGACGACGTTTGGTGTCAAATCAACCGACAGTTTCCTATTGTGCAATCGTGTCTGTTGTTTACACAAAGTGTTGTCGAAGGAGTTAAAGAAAAGAATCGGCTGCAGAAAGATCGGGACTTGTTTTCTTTGCACCCAATCAAAGATTTCAGTATTGAAGTTGTTTTCAAAACAGTTCCTTTCATTACTGGTGTTGTGGATGATGAAGTGATTACCCCCAGTGCGTTTCAAAATGAAGGTAGTGAAGCATGGATGGACGTGAGTGATTTCCCATTGTATAGAAGAAATCTAAAGCAACAAAGCCAAGAATCTGGTGGGAAAGAGACCCACGTTGAGTTACCTACTGTCGAAACTGCTCATAAGAAAACAGAGAATTCTAGTGCTTCAACTGTCAGCTCAGATGTTCAAAAGAAGATCACTCCTTGGAATGTGATTGCTCCGCTACAAGAGGACCAGGACAGTTTTGATCAACTCCGTCAACGTCCTTTAGAGCGTCGCGTTGGTGATCTCATCGTCGTAGCATCGTTAATTGATCGTGGTCCGAACCTTGGCGGACTATGCCGAACATGTGAAATCTTTGGTGCGTCCAGACTTGTGCTCGGCAGTAAACAAGTTGTTTCAGAAAAAGATTTCAAATCTGTTAGTGTTTCATCGGAGAAATGGGTTGATATCGAGGAAGTTATGGTACATGATCTGGAGATGTATTTGTTAAAAATGAAGAGAGAAGGTTTCACAATTGTTGGCGTAGAACAAACCGCCCAGAGTAAGAAATTGGTGGACTTTCAGTTCCCTCGCAGCACAGTATTGGTCTTGGGAAATGAAAAGGCTGGCATACCTGTGGAAATTATTCAGTTGTTAGATGAATGTGTCGAGATCCGTCAACATGGTATAATTCGGTCTCTTAATGTACATGTCAGTGGCGCTTTGTTAATTTGGGAGTATACCAGACAACACTTGAATGATAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13395	tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Homo sapiens OX=9606 GN=TARBP1 PE=1 SV=1
E9Q368	tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Mus musculus OX=10090 GN=Tarbp1 PE=1 SV=1
Q07527	tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005153 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00588 all species →	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029026 all species →	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR044748 all species →	Domain	Trm3/ TARBP1, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029028 all species →	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR045330 all species →	Family	Probable methyltransferase Trm3/TARBP1	Interproscan
IPR001537 all species →	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12029 all species →	RNA METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016423 all species →	Molecular Function	tRNA (guanine) methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15333	TRM3, TARBP1; tRNA guanosine-2'-O-methyltransferase	EC:2.1.1.34	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.