Gene detail

Detailed information of ENSLDHP00000032813.1 in Eunicella cavolini

Genomic Location: chr4:44400626...44411805
NR annotation: CAB3997474.1, glycine betaine transporter -like [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000035610

atgattcaaaaccacagtgtcccagccggttttgaaaatgattgtaggtTAATGAGCACACTTCTGCACAGTGTACCAGCTCTGGCAAACATGGACAACAGCAACACCAATCGGAGCAGCTCGAGCAGGAAATGTCGAACATTCAAAGCAAAGTTTGGGTGTTTATCGATTGATTTAAACCCAGTTGTGTCCATAATCTCTGGTTTCGTTATTTGGGCGTTCGTGATATGGTGCGTAATTGATACGGACAGAGCTTCAGATGGTATGAAGGATGCTAAGCGTTGGATTACAGAGAAATTCACATGGCTTTACATTGGCACACAAGATGTTTGGTTCGTTTTCCTTCTCATTGTCTATTTCTCGAAATACAGTAAAATGAAACTGGGAAAGGACCATGATGAACCAGAGTTCAGCATCGCGACTTACTTCACCATGTTGTTCTCAGCTGGAATAGCTATCGGACTATTCTACTATGCTGTTGCTGAACCCATTTATCATTACTACatgaataaacaattttgtatttttctcagATACTCGGACAACCAACGTGCACAGGATGCTATCAATATCACACTGTTTCACTGGGGAGTTCATGCTTGGGTAGTATACAGTCTGGTTGGTATCCTCATGGGTCTGGTGGGTTACAGACAAGGACTGCCTATGACAATACGTTCATGTTTTCATCCTCTGATTGGGGAAAGGATCTACGGGTGGATTGGTGACGTCATCGATATTCTCTCAGTAATTGTCACCATGTTTGGTGTATGCACGAGCCTTGGTCTTGGAGTGATCACATTAAATTCTGGCATCAATAGAATGAACAGTGATATTGAAGAGAACAGTAGAAAtcagattattattatttgggTAATCACGGCAATTGCAACCATCTCAGTCATATCAGGACTCAAAGTTGGTATTCGTCGTCTTAGCGAGGTTTGCTTCTGCATGGGAATGACACTTATGATGTTCGTTTTGTTCTATGATAATACTTGGTTTCTACTCAATCTCTATGTGCAAAGTATTGGATACTACTTTCAATGGATCATTCAACTTGGTTTTCACACTGATGCATTCGCTCAGCTTGGCAATGCTCCTGACAAAATGGAGAATCCCACTTGGATGGACAGCTGGACGATCTTCTATTGGGGTTGGTGGATTGCATGGTCCGCATTTGTTGGTATGTTTATAGCCAAAGTTTCCAAAGGTCGAACCATCCGTAATGTGATCCACGCAACTATGACAGCCCCGATCTTATACAGCTTCCTGTGGCTTTGTATCTTTGGTGGTGTCGGTATCAAAATGGAACGTGAGGCAGAGCTAAGTAACATCACGTGTACCTCCGTCCTGGGTGGAAAGCTTTCCACAGAATCATACAACGGACTGTACCGTCTGTCGTGCCGAGGGTATAGCCAAATGTTTTTCGACGTGCTCCAACAGTATGGTGAGAATTTAGAAGGCTTCTTATTCGGTTTATCTATGGCAACTATCGTCCTATACTTCGTGACAAGTTCTGACAGTGGTTCCCTGGTAATTGATTGTCTATCGGCCAATGGCAGTCCAGAACCGCCCATTGCGCAACGTATATTTTGGGCGTTGACAGAAGGTGGGTATACATACTTGTCATGTCTTCTGAAAGAAGAAGCCGGAGAAAACGATCCACAGGCTCCCCAATTTTCATGCTCTCTTCTCGCGGCATTTGATTTCAACTCGGCCGCGAAATGGTTGAATGTCCTTACTGCAGCTATATTTCCATGGTTGCGCGGAGGCCAAGCTGCGGGCAAGGTTTACAACCAGAAATCTTGGCCTCATATGCTTGTCCTTGCTTTATTGATGTATGCTTGGATTGCTCTCGAAATTGGTGAAATTTCGGAAGATGGTTTGGCGTATATTGGTTGGGTTGTGTTGTTTGCATTCTTTGTTTATCTGATGGCAATACGTATTGCCATTCGAGCTAGGAGTGGGATCGAAGGCAGTATGTTTGAAGATGCTCTGGTTGTTATCTTTTTGTGTCCACTTACAGTTGACCAGATGCATGAGCATATCTTTTTCGGAGAAGATGCGCAAGAGAACCGACGACACGAAAATATTGGCCTTGATAATCGAGGAAAAGCAAACGACATGCACACAGATGAAAAAAGCAATGGAGAAAAATTTGAAGATGCTCAATTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3XCN6	Glycine betaine/proline betaine transporter BetS OS=Rhizobium meliloti OX=382 GN=betS PE=1 SV=1
A0A0B5RUB0	Trimethylamine transporter OS=Myroides profundi OX=480520 GN=tmaT PE=1 SV=1
Q79VE0	Ectoine/glycine betaine/proline transporter EctP OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534) OX=196627 GN=ectP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000606 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000060 all species →	Family	BCCT transporter family	Interproscan
IPR018093 all species →	Conserved_site	BCCT transporter, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSLDHP00000032813.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.