Gene detail

Detailed information of ENSLDHP00000033559.1 in Eunicella cavolini

Genomic Location: not available for this species
NR annotation: CAB3997474.1, glycine betaine transporter -like [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Sequence

CDS

ENSLDHT00000036362

ATGAAGGATGCTAAGCGTTGGATTACAGAGAAATTCACATGGCTTTACATTGGCACACAAGATGTTTGGTTCGTTTTCCTTCTCATTGTCTATTTCTCGAAATACAGTAAAATGAAACTGGGAAAGGACCATGATGAACCAGAGTTCGGCAACGCGACTTACTTCAGCATGTTGTTCTCGGCTGGAATAGCTATCGGACTCTTCTACTATGCTGTTGCTGAACCCATTTATCATTACGCGCCAGAAGCAAAATCCGGTTATAACAGATATTGGGGAAGATACTCGGACAACCAACGTGCGCAGGATGCTATCAATATCACACTGTTTCACTGGGGAGTTCATGCTTGGGTAGTATACAGTCTGGTTGGTATCCTCATAGGTCTGGTGGGTTACAGACAAGGACTGCCTATGACAATACGTTCATGTTTTCATCCTCTCATTGGGGAAAGGATCTACGGGTGGATTGGTGACGCCATCGATATTCTCTCAGTAATTGTCACCATGTTTGGTGTATGCACGAGCCTTGGTCTTGGAGTGATCACATTAAATTCTGGCATCAATAGAATGAACAGTGATATTGAAGAGAACAGTACAAAtcagattattattatttgggTAGTCACGGCAATTGCAACCATCTCAGTCATATCAGGACTCAAAGTTGGTATTCGTCGTCTTAGCGAGGTTTGCTTCTGCATGGGAATGGCAATTATGATGTTTGTTTTGTTCTATGATGATACTTGGTTTCTACTCAATCTCTATGTGCAAAGTATTGGATACTACTTTCAATGGATCATTCAACTTGGTTTTCACACTGATGCATTTGCTCAGCTTGGCAATGCTCCTGACAAAATGGAGAATCCCACTTGGATGGACAGCTGGACGATCTTCTATTGGGGTTGGTGGATTGCATGGTCCGCATTTGTTGGTATGTTTATAGCCAAAGTTTCCAAAGGTCGAACCATCCGTAATGTGATCAACGCAACTATGACAGCCCCGATCTTATACAGCTTCCTGTGGCTTTGTATCTTTGGTGGTGTCGGTATCAAAATGGAACGTGAGGCAGAGCTAAATAACATCACGTGTGACTCCGTCCTGGGTGGTGGGAACTCCACAGAATCATACAACGGACTGTACCGTCTGCGGTGCCGAGGGCCCAGCCAAATGTTTTTCGACGTGCTCCAGCAGTATGGTGAGAACTTAGAAGGCTTCTTATTCGGTTTATCTATGGCAACCATCGTCTTATACTTCGTGACAAGCTCCGACAGTGGTTCTCTGGTTATTGATTGTCTATCGGCCAATGGCAGTCCAGAACCGCCCATTGTGCAACGTATATTTTGGGCGTTGACAGAAGGTGCCTGTGCTACAGCGCTGTTGAAGGCTGGTGGTACAGATGCTTTGAACGCCTTGCAAACAGTCTCTATTGCTGGCGGCTTGGTCTACACTGTCATCATATGTTTCATGTGTGTTGCAGTATGGAAAGTTCTGAAAGAAGAAGCCGGAGAAAACGATCCACAGGCTCCCCAATTTTCATGCTCTCTTCTCGCGGCATTTGATTTCAACTCGGCCGCGAAATGGTTGAATGTCCTTATTGCAGCTATATTTCCATGGTTGCGCGGAGGCCAAGCTGCGGGCAAGGTTTACAACCAGAAATCTTGGCCTCATATGCTTGTCCTTGCTTTATTGATGTATGCTTGGATTGCTCTCGAAATTGGTGAAATCGCAGAAGATGGTTTGGCGTATATTGGTTGGGTTGTGCTGTTTGCATTCTTTGTTTATCTGATGGCAATACGTATTGCCATTCGAGCTAGGAGTGGGATCGAGGGCAGTATGTTTGAAGATGCTCTGGCTGTTATCTTTTTGTATCCACTTACAGTTGACCAGATGCATGAGCATATCTTTTTCGGAGAAGATGCGCAAGAGAAGCGACGACACGAAGATATTGGCCTTGATAATCGAGGAAAAGCAAACGACATGCACAAAGATGAGAAAAGCAATGGAGGAAAATTTGAAGATTCTCATTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3XCN6	Glycine betaine/proline betaine transporter BetS OS=Rhizobium meliloti OX=382 GN=betS PE=1 SV=1
Q24SP9	Probable glycine betaine transporter OS=Desulfitobacterium hafniense (strain Y51) OX=138119 GN=DSY3154 PE=2 SV=1
A0A0B5RUB0	Trimethylamine transporter OS=Myroides profundi OX=480520 GN=tmaT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000060 all species →	Family	BCCT transporter family	Interproscan
IPR018093 all species →	Conserved_site	BCCT transporter, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02168	betT, betS; choline/glycine/proline betaine transport protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.