Gene detail

Detailed information of ENSLDHP00000035234.1 in Eunicella cavolini

Genomic Location: chr4:6050805...6066627
NR annotation: CAB3981955.1, Gamma-tubulin complex component 3 [Paramuricea clavata]
Species Eunicella cavolini · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSLDHT00000038266

ATGTCAGATCTTCAAGAGGGAATCATCTCACATTTAGTTCTAATTCTAACGTCACGACTCTTACAAAAAGACAAGAACTCAAGTGAAGTGTCAGAGTTTTTTCAGTATGCACTCAGAGTACTTGGAAGTCGCTTTACTCCATCAGTGTCAAAGGATGAATTCCAGGTTATTGAGCGTATGAAAAGACAATTTGTACATGACCGTAGGGAATCAGATGCTGCTCTTCTTAGTGAATTATACAGCAAAATATCATCAAAGAGCACACTGAAGAATCGTTGGTCCGTATTGTATTTACTCTCTATTCTTCGTAATAAAGACCGGGATGACGGTGATTCAACCCGCAAGACCAGCGGAATGCCGGCTTTCTTTGGTCGCGGTTTACCAGCTTTATCCACATCTACTCCTCAACAGCCATTACAACTCACCACAGTCCCACGTGGTCATTCAACCGGAACTAGTAGTGGTATCAGCAGTATAGCTCATACAGGTCGCACCGTTTCCTCTCAATCTCTGTCTTCCGTTGTACATTCCTTACCACGTGACCAGACTACGTCGGCAACAACTTCATACATAGGAACGTTATCTCGCCGAGATGAGGaaagtaaatttcaaaatcCTGGAATAAGAACTCTGGAGGAATATAGAAAGAAGACGAAAGATAATATTGAAAATATGTCGTTCGAAGCGTCCGACGCGCTCCTGATTCGAGACTTGATTTACGTGTTTCAAGGCATTGATGGCAAGCTGATAAAATACGATCAAATAGACGACGGTTACAGAATCGAACGTAGTGTAGGTGTTTCATATACTACTCGAGCTCTGGTGAATAAATTATCTGAGTTGGGTTGGTTGTTTACCAAGATACGGCGTTATCTCGACGCAAGGACTGGTGACAAAGCATTAGGTCTAGTTGGTCAGAGTTTCTGTGCTGCATTACAACAGGAGCTTACAGAGTATTACCGTTTGATAGCAGTATTTGAAGCTCAACAACAACATTTGACAGACGCAGGACTTGGTGACGAAACGTGTAGTAATTCACTAACGCTGAGAAGACTTCTAGTGTGGACATATACTCCTTTGTTAAGACTCAAGACTTTGGCTGCTTTAGTGGAAATTTGCAAAGGTAAGAAAGGAGGTTCACTTCTTTCCGCAATTCATTCCTACATGCAACACGGTGATCCGTACGTTAAAGCTCTTGTTAAACATATCTTAAACCAAGTCGCAGAACCTGTCAAAATTATTTTATCGAGATGGATTTATGAGGGAGAATTGGACGATGCGTTCAATGAGTTTTTCGTTGCTGCTGACTACAGTGTTCCAGATGAAAGACTTTGGTTTGAAAAGTACAGTATTAGAAAAGCCATGTTACCTTCTTTCATCTCTCTTGAGTTAGGAACCAAGATTTTGAATATTGGCAAATCGATAAACTTCATTCACCAAGTCTGTCACGACCATTTTACGTTGAAGGAACGCAGATTATTGAACGAAGCAAATAAAGGTTCAACAAAATTAACAGATAAAGACGATTTTGGTGGCACTGCGCTTCAAGAAGCAATTGATATTGCGTACAAAGAAACCAGCAGATATTTACTAGAAATTCTTGTTAGTAAATATAAATTTGTCGATCATCTAAAGGGAATGAGAAGATATCTTCTTCTTGGCCAAGGAGATTTTATTCGTCATTTGATGGATTTATTAGAGCCAGATCTTGCAAAGCCAGCAAGtacattgtatacacacaatcTCTCGGGTGTTCTGGAGGCGGCAATTAGAGCTACAAATGCTCAGTTTGAAGATCCTGATATTATAAAGAGGCTGGATTGTAGATTATTAGAGGTATCCGTTGGAGATTCTGGCTGGGATGTTTTCAGTTTGTGTTATAAAGTGGATGGACCAATTGGAACCGTATTTACCCCAGAATGTACCCAAATGTACTTGAGGATTTTTAATTTTCTCTGGCGGGCGAAGAGAATGGAGTATATCTTGACTTCTACTTGGAAAGCACAAATGTCTTATTCAAGATTATTTAGATCATTGCCAGAACTAAGAGACGTCCTTCACACGTGTAACACACTCAACTCAGAAATGATACATTTCATTAATCAAATGCAGTATTATATCACATTTGAGATCCTAGAATGCTGTTGGGCTGAACTTCTTAAGAAAGTCAATGAATCAACAAATTTAGATGATATCATCGCAGCACACGAGGATTTTCTTCACTATATTTTATCAAGCTGTCTTATTGATAACCAGTCCAAGGACATGTTAGACCAATTGCGAGCaatatttgaccaaattatcaAGTTTCAAGCCACCCAGGACACTTTATTTTCTCGAGCTTTGTTTGAGTTGGAATTGAGAAAGAAGAAAACAGATGACATTAAAGAAAATACTGAAGAGGGACGCTGGGGGCTGACTGCGGCCGAAGAAGAGCGAGAGGAATGGAGACAAGAGGATTTCAGAACAGAATTTTTACCTGTTCAACGAGCACAACTACAAATCGTGTCTCGGTCTTATGAAAATCTTGTGGAACAATTTCTGTTGAAGTTAACAAGTCATTCAGATGTCAACTTAAGATTTTTAAGTTTCCGTTTGGATTTCAATGAACATTACAAGAAGAAAGAGCCGCGATTGCGCAGTACGCTCTCAGTCAAGTACACAAGAAGAAAGGGTTTACCTGGAAAACAAAAGACAGATTCAAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O73787	Gamma-tubulin complex component 3 homolog OS=Xenopus laevis OX=8355 GN=tubgcp3 PE=1 SV=1
Q96CW5	Gamma-tubulin complex component 3 OS=Homo sapiens OX=9606 GN=TUBGCP3 PE=1 SV=2
P58854	Gamma-tubulin complex component 3 OS=Mus musculus OX=10090 GN=Tubgcp3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003611 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04130 all species →	GCP_C_terminal	Gamma tubulin complex component C-terminal	Domain	Interproscan
PF17681 all species →	GCP_N_terminal	Gamma tubulin complex component N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040457 all species →	Domain	Gamma tubulin complex component, C-terminal	Interproscan
IPR041470 all species →	Domain	Gamma tubulin complex component protein, N-terminal	Interproscan
IPR007259 all species →	Family	Gamma-tubulin complex component protein	Interproscan
IPR042241 all species →	Homologous_superfamily	Gamma-tubulin complex component, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19302 all species →	GAMMA TUBULIN COMPLEX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0000923 all species →	Cellular Component	equatorial microtubule organizing center	Interproscan
GO:0000930 all species →	Cellular Component	gamma-tubulin complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16570	TUBGCP3, GCP3; gamma-tubulin complex component 3	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →