Detailed information of ENSLDHP00000036185.1 in Eunicella cavolini

Genomic Location: chr4:2921069...2946870
NR annotation: XP_028405592.1, plexin-A4-like [Dendronephthya gigantea]
Species Eunicella cavolini · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80UG2Plexin-A4 OS=Mus musculus OX=10090 GN=Plxna4 PE=1 SV=3
Q9HCM2Plexin-A4 OS=Homo sapiens OX=9606 GN=PLXNA4 PE=1 SV=4
P70206Plexin-A1 OS=Mus musculus OX=10090 GN=Plxna1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001537 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17960
all species →
TIG_plexinTIG domainDomainInterproscan
PF01833
all species →
TIGIPT/TIG domainDomainInterproscan
PF20170
all species →
Plexin_RBDPlexin cytoplasmic RhoGTPase-binding domainDomainInterproscan
PF01437
all species →
PSIPlexin repeatFamilyInterproscan
PF01403
all species →
SemaSema domainRepeatInterproscan
PF08337
all species →
Plexin_cytoplPlexin cytoplasmic RasGAP domainDomainInterproscan
PF18020
all species →
TIG_2TIG domain found in plexinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR014756
all species →
Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR041019
all species →
DomainPlexin, TIG domain 1Interproscan
IPR002909
all species →
DomainIPT domainInterproscan
IPR008936
all species →
Homologous_superfamilyRho GTPase activation proteinInterproscan
IPR046800
all species →
DomainPlexin, cytoplasmic RhoGTPase-binding domainInterproscan
IPR036352
all species →
Homologous_superfamilySema domain superfamilyInterproscan
IPR031148
all species →
FamilyPlexin familyInterproscan
IPR015943
all species →
Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR002165
all species →
RepeatPlexin repeatInterproscan
IPR001627
all species →
DomainSema domainInterproscan
IPR016201
all species →
DomainPSI domainInterproscan
IPR013548
all species →
DomainPlexin, cytoplasmic RasGAP domainInterproscan
IPR041362
all species →
DomainPlexin, TIG domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22625
all species →
PLEXINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0017154
all species →
Molecular Functionsemaphorin receptor activityInterproscan
GO:0002116
all species →
Cellular Componentsemaphorin receptor complexInterproscan
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0030334
all species →
Biological Processregulation of cell migrationInterproscan
GO:0071526
all species →
Biological Processsemaphorin-plexin signaling pathwayInterproscan
GO:1902287
all species →
Biological Processsemaphorin-plexin signaling pathway involved in axon guidanceInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSLDHP00000036185.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Eunicella cavolini tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Eunicella cavolini, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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